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DrVai-Rag-Testing
/
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/python3.10
/site-packages
/biopython-1.81-py3.10.egg-info
/SOURCES.txt
| CONTRIB.rst | |
| CONTRIBUTING.rst | |
| DEPRECATED.rst | |
| LICENSE | |
| LICENSE.rst | |
| MANIFEST.in | |
| NEWS.rst | |
| README.rst | |
| setup.cfg | |
| setup.py | |
| Bio/File.py | |
| Bio/LogisticRegression.py | |
| Bio/MarkovModel.py | |
| Bio/MaxEntropy.py | |
| Bio/NaiveBayes.py | |
| Bio/Seq.py | |
| Bio/SeqFeature.py | |
| Bio/SeqRecord.py | |
| Bio/__init__.py | |
| Bio/_utils.py | |
| Bio/bgzf.py | |
| Bio/cpairwise2module.c | |
| Bio/kNN.py | |
| Bio/pairwise2.py | |
| Bio/Affy/CelFile.py | |
| Bio/Affy/__init__.py | |
| Bio/Align/AlignInfo.py | |
| Bio/Align/__init__.py | |
| Bio/Align/_aligners.c | |
| Bio/Align/a2m.py | |
| Bio/Align/bed.py | |
| Bio/Align/bigbed.py | |
| Bio/Align/bigmaf.py | |
| Bio/Align/bigpsl.py | |
| Bio/Align/clustal.py | |
| Bio/Align/emboss.py | |
| Bio/Align/exonerate.py | |
| Bio/Align/fasta.py | |
| Bio/Align/hhr.py | |
| Bio/Align/interfaces.py | |
| Bio/Align/maf.py | |
| Bio/Align/mauve.py | |
| Bio/Align/msf.py | |
| Bio/Align/nexus.py | |
| Bio/Align/phylip.py | |
| Bio/Align/psl.py | |
| Bio/Align/sam.py | |
| Bio/Align/stockholm.py | |
| Bio/Align/tabular.py | |
| Bio/Align/Applications/_ClustalOmega.py | |
| Bio/Align/Applications/_Clustalw.py | |
| Bio/Align/Applications/_Dialign.py | |
| Bio/Align/Applications/_MSAProbs.py | |
| Bio/Align/Applications/_Mafft.py | |
| Bio/Align/Applications/_Muscle.py | |
| Bio/Align/Applications/_Prank.py | |
| Bio/Align/Applications/_Probcons.py | |
| Bio/Align/Applications/_TCoffee.py | |
| Bio/Align/Applications/__init__.py | |
| Bio/Align/substitution_matrices/__init__.py | |
| Bio/Align/substitution_matrices/data/BENNER22 | |
| Bio/Align/substitution_matrices/data/BENNER6 | |
| Bio/Align/substitution_matrices/data/BENNER74 | |
| Bio/Align/substitution_matrices/data/BLASTN | |
| Bio/Align/substitution_matrices/data/BLASTP | |
| Bio/Align/substitution_matrices/data/BLOSUM45 | |
| Bio/Align/substitution_matrices/data/BLOSUM50 | |
| Bio/Align/substitution_matrices/data/BLOSUM62 | |
| Bio/Align/substitution_matrices/data/BLOSUM80 | |
| Bio/Align/substitution_matrices/data/BLOSUM90 | |
| Bio/Align/substitution_matrices/data/DAYHOFF | |
| Bio/Align/substitution_matrices/data/FENG | |
| Bio/Align/substitution_matrices/data/GENETIC | |
| Bio/Align/substitution_matrices/data/GONNET1992 | |
| Bio/Align/substitution_matrices/data/HOXD70 | |
| Bio/Align/substitution_matrices/data/JOHNSON | |
| Bio/Align/substitution_matrices/data/JONES | |
| Bio/Align/substitution_matrices/data/LEVIN | |
| Bio/Align/substitution_matrices/data/MCLACHLAN | |
| Bio/Align/substitution_matrices/data/MDM78 | |
| Bio/Align/substitution_matrices/data/MEGABLAST | |
| Bio/Align/substitution_matrices/data/NUC.4.4 | |
| Bio/Align/substitution_matrices/data/PAM250 | |
| Bio/Align/substitution_matrices/data/PAM30 | |
| Bio/Align/substitution_matrices/data/PAM70 | |
| Bio/Align/substitution_matrices/data/RAO | |
| Bio/Align/substitution_matrices/data/RISLER | |
| Bio/Align/substitution_matrices/data/SCHNEIDER | |
| Bio/Align/substitution_matrices/data/STR | |
| Bio/Align/substitution_matrices/data/TRANS | |
| Bio/AlignIO/ClustalIO.py | |
| Bio/AlignIO/EmbossIO.py | |
| Bio/AlignIO/FastaIO.py | |
| Bio/AlignIO/Interfaces.py | |
| Bio/AlignIO/MafIO.py | |
| Bio/AlignIO/MauveIO.py | |
| Bio/AlignIO/MsfIO.py | |
| Bio/AlignIO/NexusIO.py | |
| Bio/AlignIO/PhylipIO.py | |
| Bio/AlignIO/StockholmIO.py | |
| Bio/AlignIO/__init__.py | |
| Bio/Alphabet/__init__.py | |
| Bio/Application/__init__.py | |
| Bio/Blast/Applications.py | |
| Bio/Blast/NCBIWWW.py | |
| Bio/Blast/NCBIXML.py | |
| Bio/Blast/ParseBlastTable.py | |
| Bio/Blast/Record.py | |
| Bio/Blast/__init__.py | |
| Bio/CAPS/__init__.py | |
| Bio/Cluster/__init__.py | |
| Bio/Cluster/cluster.c | |
| Bio/Cluster/cluster.h | |
| Bio/Cluster/clustermodule.c | |
| Bio/Compass/__init__.py | |
| Bio/Data/CodonTable.py | |
| Bio/Data/IUPACData.py | |
| Bio/Data/PDBData.py | |
| Bio/Data/SCOPData.py | |
| Bio/Data/__init__.py | |
| Bio/Emboss/Applications.py | |
| Bio/Emboss/Primer3.py | |
| Bio/Emboss/PrimerSearch.py | |
| Bio/Emboss/__init__.py | |
| Bio/Entrez/Parser.py | |
| Bio/Entrez/__init__.py | |
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| Bio/Graphics/BasicChromosome.py | |
| Bio/Graphics/ColorSpiral.py | |
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| Bio/Graphics/Distribution.py | |
| Bio/Graphics/KGML_vis.py | |
| Bio/Graphics/__init__.py | |
| Bio/Graphics/GenomeDiagram/_AbstractDrawer.py | |
| Bio/Graphics/GenomeDiagram/_CircularDrawer.py | |
| Bio/Graphics/GenomeDiagram/_Colors.py | |
| Bio/Graphics/GenomeDiagram/_CrossLink.py | |
| Bio/Graphics/GenomeDiagram/_Diagram.py | |
| Bio/Graphics/GenomeDiagram/_Feature.py | |
| Bio/Graphics/GenomeDiagram/_FeatureSet.py | |
| Bio/Graphics/GenomeDiagram/_Graph.py | |
| Bio/Graphics/GenomeDiagram/_GraphSet.py | |
| Bio/Graphics/GenomeDiagram/_LinearDrawer.py | |
| Bio/Graphics/GenomeDiagram/_Track.py | |
| Bio/Graphics/GenomeDiagram/__init__.py | |
| Bio/HMM/DynamicProgramming.py | |
| Bio/HMM/MarkovModel.py | |
| Bio/HMM/Trainer.py | |
| Bio/HMM/Utilities.py | |
| Bio/HMM/__init__.py | |
| Bio/KEGG/REST.py | |
| Bio/KEGG/__init__.py | |
| Bio/KEGG/Compound/__init__.py | |
| Bio/KEGG/Enzyme/__init__.py | |
| Bio/KEGG/Gene/__init__.py | |
| Bio/KEGG/KGML/KGML_parser.py | |
| Bio/KEGG/KGML/KGML_pathway.py | |
| Bio/KEGG/KGML/__init__.py | |
| Bio/KEGG/Map/__init__.py | |
| Bio/Medline/__init__.py | |
| Bio/NMR/NOEtools.py | |
| Bio/NMR/__init__.py | |
| Bio/NMR/xpktools.py | |
| Bio/Nexus/Nexus.py | |
| Bio/Nexus/Nodes.py | |
| Bio/Nexus/StandardData.py | |
| Bio/Nexus/Trees.py | |
| Bio/Nexus/__init__.py | |
| Bio/Nexus/cnexus.c | |
| Bio/PDB/AbstractPropertyMap.py | |
| Bio/PDB/Atom.py | |
| Bio/PDB/Chain.py | |
| Bio/PDB/DSSP.py | |
| Bio/PDB/Dice.py | |
| Bio/PDB/Entity.py | |
| Bio/PDB/FragmentMapper.py | |
| Bio/PDB/HSExposure.py | |
| Bio/PDB/MMCIF2Dict.py | |
| Bio/PDB/MMCIFParser.py | |
| Bio/PDB/Model.py | |
| Bio/PDB/NACCESS.py | |
| Bio/PDB/NeighborSearch.py | |
| Bio/PDB/PDBExceptions.py | |
| Bio/PDB/PDBIO.py | |
| Bio/PDB/PDBList.py | |
| Bio/PDB/PDBParser.py | |
| Bio/PDB/PICIO.py | |
| Bio/PDB/PSEA.py | |
| Bio/PDB/Polypeptide.py | |
| Bio/PDB/Residue.py | |
| Bio/PDB/ResidueDepth.py | |
| Bio/PDB/SASA.py | |
| Bio/PDB/SCADIO.py | |
| Bio/PDB/Selection.py | |
| Bio/PDB/Structure.py | |
| Bio/PDB/StructureAlignment.py | |
| Bio/PDB/StructureBuilder.py | |
| Bio/PDB/Superimposer.py | |
| Bio/PDB/__init__.py | |
| Bio/PDB/ccealignmodule.c | |
| Bio/PDB/cealign.py | |
| Bio/PDB/ic_data.py | |
| Bio/PDB/ic_rebuild.py | |
| Bio/PDB/internal_coords.py | |
| Bio/PDB/kdtrees.c | |
| Bio/PDB/mmcifio.py | |
| Bio/PDB/parse_pdb_header.py | |
| Bio/PDB/qcprot.py | |
| Bio/PDB/vectors.py | |
| Bio/PDB/QCPSuperimposer/__init__.py | |
| Bio/PDB/QCPSuperimposer/qcprotmodule.c | |
| Bio/PDB/mmtf/DefaultParser.py | |
| Bio/PDB/mmtf/__init__.py | |
| Bio/PDB/mmtf/mmtfio.py | |
| Bio/Pathway/__init__.py | |
| Bio/Pathway/Rep/Graph.py | |
| Bio/Pathway/Rep/MultiGraph.py | |
| Bio/Pathway/Rep/__init__.py | |
| Bio/Phylo/BaseTree.py | |
| Bio/Phylo/CDAO.py | |
| Bio/Phylo/CDAOIO.py | |
| Bio/Phylo/Consensus.py | |
| Bio/Phylo/NeXML.py | |
| Bio/Phylo/NeXMLIO.py | |
| Bio/Phylo/Newick.py | |
| Bio/Phylo/NewickIO.py | |
| Bio/Phylo/NexusIO.py | |
| Bio/Phylo/PhyloXML.py | |
| Bio/Phylo/PhyloXMLIO.py | |
| Bio/Phylo/TreeConstruction.py | |
| Bio/Phylo/__init__.py | |
| Bio/Phylo/_cdao_owl.py | |
| Bio/Phylo/_io.py | |
| Bio/Phylo/_utils.py | |
| Bio/Phylo/Applications/_Fasttree.py | |
| Bio/Phylo/Applications/_Phyml.py | |
| Bio/Phylo/Applications/_Raxml.py | |
| Bio/Phylo/Applications/__init__.py | |
| Bio/Phylo/PAML/__init__.py | |
| Bio/Phylo/PAML/_paml.py | |
| Bio/Phylo/PAML/_parse_baseml.py | |
| Bio/Phylo/PAML/_parse_codeml.py | |
| Bio/Phylo/PAML/_parse_yn00.py | |
| Bio/Phylo/PAML/baseml.py | |
| Bio/Phylo/PAML/chi2.py | |
| Bio/Phylo/PAML/codeml.py | |
| Bio/Phylo/PAML/yn00.py | |
| Bio/PopGen/__init__.py | |
| Bio/PopGen/GenePop/Controller.py | |
| Bio/PopGen/GenePop/EasyController.py | |
| Bio/PopGen/GenePop/FileParser.py | |
| Bio/PopGen/GenePop/LargeFileParser.py | |
| Bio/PopGen/GenePop/__init__.py | |
| Bio/Restriction/PrintFormat.py | |
| Bio/Restriction/Restriction.py | |
| Bio/Restriction/Restriction_Dictionary.py | |
| Bio/Restriction/__init__.py | |
| Bio/SCOP/Cla.py | |
| Bio/SCOP/Des.py | |
| Bio/SCOP/Dom.py | |
| Bio/SCOP/Hie.py | |
| Bio/SCOP/Raf.py | |
| Bio/SCOP/Residues.py | |
| Bio/SCOP/__init__.py | |
| Bio/SVDSuperimposer/__init__.py | |
| Bio/SearchIO/BlatIO.py | |
| Bio/SearchIO/FastaIO.py | |
| Bio/SearchIO/__init__.py | |
| Bio/SearchIO/_index.py | |
| Bio/SearchIO/_utils.py | |
| Bio/SearchIO/BlastIO/__init__.py | |
| Bio/SearchIO/BlastIO/blast_tab.py | |
| Bio/SearchIO/BlastIO/blast_text.py | |
| Bio/SearchIO/BlastIO/blast_xml.py | |
| Bio/SearchIO/ExonerateIO/__init__.py | |
| Bio/SearchIO/ExonerateIO/_base.py | |
| Bio/SearchIO/ExonerateIO/exonerate_cigar.py | |
| Bio/SearchIO/ExonerateIO/exonerate_text.py | |
| Bio/SearchIO/ExonerateIO/exonerate_vulgar.py | |
| Bio/SearchIO/HHsuiteIO/__init__.py | |
| Bio/SearchIO/HHsuiteIO/hhsuite2_text.py | |
| Bio/SearchIO/HmmerIO/__init__.py | |
| Bio/SearchIO/HmmerIO/_base.py | |
| Bio/SearchIO/HmmerIO/hmmer2_text.py | |
| Bio/SearchIO/HmmerIO/hmmer3_domtab.py | |
| Bio/SearchIO/HmmerIO/hmmer3_tab.py | |
| Bio/SearchIO/HmmerIO/hmmer3_text.py | |
| Bio/SearchIO/InterproscanIO/__init__.py | |
| Bio/SearchIO/InterproscanIO/interproscan_xml.py | |
| Bio/SearchIO/_legacy/NCBIStandalone.py | |
| Bio/SearchIO/_legacy/ParserSupport.py | |
| Bio/SearchIO/_legacy/__init__.py | |
| Bio/SearchIO/_model/__init__.py | |
| Bio/SearchIO/_model/_base.py | |
| Bio/SearchIO/_model/hit.py | |
| Bio/SearchIO/_model/hsp.py | |
| Bio/SearchIO/_model/query.py | |
| Bio/SeqIO/AbiIO.py | |
| Bio/SeqIO/AceIO.py | |
| Bio/SeqIO/FastaIO.py | |
| Bio/SeqIO/GckIO.py | |
| Bio/SeqIO/IgIO.py | |
| Bio/SeqIO/InsdcIO.py | |
| Bio/SeqIO/Interfaces.py | |
| Bio/SeqIO/NibIO.py | |
| Bio/SeqIO/PdbIO.py | |
| Bio/SeqIO/PhdIO.py | |
| Bio/SeqIO/PirIO.py | |
| Bio/SeqIO/QualityIO.py | |
| Bio/SeqIO/SeqXmlIO.py | |
| Bio/SeqIO/SffIO.py | |
| Bio/SeqIO/SnapGeneIO.py | |
| Bio/SeqIO/SwissIO.py | |
| Bio/SeqIO/TabIO.py | |
| Bio/SeqIO/TwoBitIO.py | |
| Bio/SeqIO/UniprotIO.py | |
| Bio/SeqIO/XdnaIO.py | |
| Bio/SeqIO/__init__.py | |
| Bio/SeqIO/_index.py | |
| Bio/SeqIO/_twoBitIO.c | |
| Bio/SeqUtils/CheckSum.py | |
| Bio/SeqUtils/CodonUsage.py | |
| Bio/SeqUtils/CodonUsageIndices.py | |
| Bio/SeqUtils/IsoelectricPoint.py | |
| Bio/SeqUtils/MeltingTemp.py | |
| Bio/SeqUtils/ProtParam.py | |
| Bio/SeqUtils/ProtParamData.py | |
| Bio/SeqUtils/__init__.py | |
| Bio/SeqUtils/lcc.py | |
| Bio/Sequencing/Ace.py | |
| Bio/Sequencing/Phd.py | |
| Bio/Sequencing/__init__.py | |
| Bio/Sequencing/Applications/_Novoalign.py | |
| Bio/Sequencing/Applications/__init__.py | |
| Bio/Sequencing/Applications/_bwa.py | |
| Bio/Sequencing/Applications/_samtools.py | |
| Bio/SwissProt/KeyWList.py | |
| Bio/SwissProt/__init__.py | |
| Bio/TogoWS/__init__.py | |
| Bio/UniGene/__init__.py | |
| Bio/UniProt/GOA.py | |
| Bio/UniProt/__init__.py | |
| Bio/Wise/__init__.py | |
| Bio/Wise/dnal.py | |
| Bio/Wise/psw.py | |
| Bio/codonalign/__init__.py | |
| Bio/codonalign/codonalignment.py | |
| Bio/codonalign/codonseq.py | |
| Bio/motifs/__init__.py | |
| Bio/motifs/_pwm.c | |
| Bio/motifs/alignace.py | |
| Bio/motifs/clusterbuster.py | |
| Bio/motifs/mast.py | |
| Bio/motifs/matrix.py | |
| Bio/motifs/meme.py | |
| Bio/motifs/minimal.py | |
| Bio/motifs/pfm.py | |
| Bio/motifs/thresholds.py | |
| Bio/motifs/transfac.py | |
| Bio/motifs/xms.py | |
| Bio/motifs/applications/__init__.py | |
| Bio/motifs/applications/_xxmotif.py | |
| Bio/motifs/jaspar/__init__.py | |
| Bio/motifs/jaspar/db.py | |
| Bio/phenotype/__init__.py | |
| Bio/phenotype/phen_micro.py | |
| Bio/phenotype/pm_fitting.py | |
| BioSQL/BioSeq.py | |
| BioSQL/BioSeqDatabase.py | |
| BioSQL/DBUtils.py | |
| BioSQL/Loader.py | |
| BioSQL/__init__.py | |
| Doc/Makefile | |
| Doc/Tutorial.html | |
| Doc/Tutorial.pdf | |
| Doc/Tutorial.tex | |
| Doc/biopdb_faq.pdf | |
| Doc/biopdb_faq.tex | |
| Doc/doc.tex | |
| Doc/Tutorial/chapter_align.tex | |
| Doc/Tutorial/chapter_appendix.tex | |
| Doc/Tutorial/chapter_blast.tex | |
| Doc/Tutorial/chapter_cluster.tex | |
| Doc/Tutorial/chapter_contributing.tex | |
| Doc/Tutorial/chapter_cookbook.tex | |
| Doc/Tutorial/chapter_entrez.tex | |
| Doc/Tutorial/chapter_graphics.tex | |
| Doc/Tutorial/chapter_introduction.tex | |
| Doc/Tutorial/chapter_kegg.tex | |
| Doc/Tutorial/chapter_learning.tex | |
| Doc/Tutorial/chapter_motifs.tex | |
| Doc/Tutorial/chapter_pdb.tex | |
| Doc/Tutorial/chapter_phenotype.tex | |
| Doc/Tutorial/chapter_phylo.tex | |
| Doc/Tutorial/chapter_popgen.tex | |
| Doc/Tutorial/chapter_quick_start.tex | |
| Doc/Tutorial/chapter_searchio.tex | |
| Doc/Tutorial/chapter_seq_annot.tex | |
| Doc/Tutorial/chapter_seq_objects.tex | |
| Doc/Tutorial/chapter_seqio.tex | |
| Doc/Tutorial/chapter_testing.tex | |
| Doc/Tutorial/chapter_uniprot.tex | |
| Doc/api/Makefile | |
| Doc/api/conf.py | |
| Doc/api/_templates/versions.html | |
| Doc/cookbook/Restriction/Restriction.html | |
| Doc/examples/ACT_example.py | |
| Doc/examples/PF05371_seed.sth | |
| Doc/examples/Plates.csv | |
| Doc/examples/Proux_et_al_2002_Figure_6.py | |
| Doc/examples/alpha.faa | |
| Doc/examples/beta.faa | |
| Doc/examples/clustal_run.py | |
| Doc/examples/ec_5.4.2.2.txt | |
| Doc/examples/fasta_dictionary.py | |
| Doc/examples/fasta_iterator.py | |
| Doc/examples/ls_orchid.fasta | |
| Doc/examples/ls_orchid.gbk | |
| Doc/examples/ls_orchid.gbk.bgz | |
| Doc/examples/ls_orchid.gbk.bz2 | |
| Doc/examples/ls_orchid.gbk.gz | |
| Doc/examples/m_cold.fasta | |
| Doc/examples/my_blast.xml | |
| Doc/examples/my_blat.psl | |
| Doc/examples/opuntia.aln | |
| Doc/examples/opuntia.dnd | |
| Doc/examples/opuntia.fasta | |
| Doc/examples/simple.dnd | |
| Doc/examples/swissprot.py | |
| Doc/examples/www_blast.py | |
| Doc/examples/nmr/noed.xpk | |
| Doc/examples/nmr/simplepredict.py | |
| Doc/images/1a8o-ca-plot.png | |
| Doc/images/BlastRecord.png | |
| Doc/images/GD_sigil_arrow_heads.png | |
| Doc/images/GD_sigil_arrow_shafts.png | |
| Doc/images/GD_sigil_labels.png | |
| Doc/images/GD_sigils.png | |
| Doc/images/PSIBlastRecord.png | |
| Doc/images/SRR001666.png | |
| Doc/images/biopython_logo.pdf | |
| Doc/images/biopython_logo.svg | |
| Doc/images/biopython_logo_l.png | |
| Doc/images/biopython_logo_m.png | |
| Doc/images/biopython_logo_old.jpg | |
| Doc/images/biopython_logo_s.png | |
| Doc/images/biopython_logo_white.png | |
| Doc/images/biopython_logo_xs.png | |
| Doc/images/dot_plot.png | |
| Doc/images/dot_plot_scatter.png | |
| Doc/images/gc_plot.png | |
| Doc/images/hist_plot.png | |
| Doc/images/phe-pairs-3pbl.png | |
| Doc/images/phylo-apaf-zoom.png | |
| Doc/images/phylo-apaf.png | |
| Doc/images/phylo-color-draw.png | |
| Doc/images/phylo-color.png | |
| Doc/images/phylo-dot.png | |
| Doc/images/phylo-draw-example.png | |
| Doc/images/phylo-rooted.png | |
| Doc/images/phylo-simple-draw.png | |
| Doc/images/plasmid_circular.png | |
| Doc/images/plasmid_circular_nice.png | |
| Doc/images/plasmid_linear.png | |
| Doc/images/plasmid_linear_nice.png | |
| Doc/images/simple_chrom.pdf | |
| Doc/images/simple_chrom.png | |
| Doc/images/smcra.png | |
| Doc/images/tRNA_chrom.pdf | |
| Doc/images/tRNA_chrom.png | |
| Doc/images/three_track_cl.png | |
| Doc/images/three_track_cl2a.png | |
| Doc/images/three_track_simple.png | |
| Scripts/query_pubmed.py | |
| Scripts/scop_pdb.py | |
| Scripts/update_ncbi_codon_table.py | |
| Scripts/GenBank/check_output.py | |
| Scripts/GenBank/check_output_simple.py | |
| Scripts/PDB/generate_three_to_one_dict.py | |
| Scripts/PDB/hsexpo.py | |
| Scripts/Performance/biosql_performance_load.py | |
| Scripts/Performance/biosql_performance_read.py | |
| Scripts/Restriction/ranacompiler.py | |
| Scripts/Restriction/rebase_update.py | |
| Scripts/SeqGui/SeqGui.py | |
| Scripts/xbbtools/README | |
| Scripts/xbbtools/nextorf.py | |
| Scripts/xbbtools/test.fas | |
| Scripts/xbbtools/testrp.fas | |
| Scripts/xbbtools/xbb_blast.py | |
| Scripts/xbbtools/xbb_blastbg.py | |
| Scripts/xbbtools/xbb_help.py | |
| Scripts/xbbtools/xbb_search.py | |
| Scripts/xbbtools/xbb_translations.py | |
| Scripts/xbbtools/xbb_utils.py | |
| Scripts/xbbtools/xbb_widget.py | |
| Scripts/xbbtools/xbbtools.py | |
| Tests/.coveragerc | |
| Tests/biosql.ini.appveyor | |
| Tests/biosql.ini.sample | |
| Tests/common_BioSQL.py | |
| Tests/common_BioSQL_online.py | |
| Tests/pairwise2_testCases.py | |
| Tests/requires_internet.py | |
| Tests/run_tests.py | |
| Tests/search_tests_common.py | |
| Tests/seq_tests_common.py | |
| Tests/test_Ace.py | |
| Tests/test_Affy.py | |
| Tests/test_AlignIO.py | |
| Tests/test_AlignIO_ClustalIO.py | |
| Tests/test_AlignIO_EmbossIO.py | |
| Tests/test_AlignIO_FastaIO.py | |
| Tests/test_AlignIO_MauveIO.py | |
| Tests/test_AlignIO_PhylipIO.py | |
| Tests/test_AlignIO_convert.py | |
| Tests/test_AlignInfo.py | |
| Tests/test_Align_Alignment.py | |
| Tests/test_Align_a2m.py | |
| Tests/test_Align_bed.py | |
| Tests/test_Align_bigbed.py | |
| Tests/test_Align_bigmaf.py | |
| Tests/test_Align_bigpsl.py | |
| Tests/test_Align_clustal.py | |
| Tests/test_Align_emboss.py | |
| Tests/test_Align_exonerate.py | |
| Tests/test_Align_fasta.py | |
| Tests/test_Align_hhr.py | |
| Tests/test_Align_maf.py | |
| Tests/test_Align_mauve.py | |
| Tests/test_Align_msf.py | |
| Tests/test_Align_nexus.py | |
| Tests/test_Align_phylip.py | |
| Tests/test_Align_psl.py | |
| Tests/test_Align_sam.py | |
| Tests/test_Align_stockholm.py | |
| Tests/test_Align_tabular.py | |
| Tests/test_Application.py | |
| Tests/test_BWA_tool.py | |
| Tests/test_BioSQL_MySQLdb.py | |
| Tests/test_BioSQL_MySQLdb_online.py | |
| Tests/test_BioSQL_mysql_connector.py | |
| Tests/test_BioSQL_mysql_connector_online.py | |
| Tests/test_BioSQL_psycopg2.py | |
| Tests/test_BioSQL_psycopg2_online.py | |
| Tests/test_BioSQL_sqlite3.py | |
| Tests/test_BioSQL_sqlite3_online.py | |
| Tests/test_Blast_Record.py | |
| Tests/test_CAPS.py | |
| Tests/test_Chi2.py | |
| Tests/test_ClustalOmega_tool.py | |
| Tests/test_Clustalw_tool.py | |
| Tests/test_Cluster.py | |
| Tests/test_CodonTable.py | |
| Tests/test_ColorSpiral.py | |
| Tests/test_Compass.py | |
| Tests/test_Consensus.py | |
| Tests/test_Dialign_tool.py | |
| Tests/test_EMBL_unittest.py | |
| Tests/test_Emboss.py | |
| Tests/test_EmbossPhylipNew.py | |
| Tests/test_EmbossPrimer.py | |
| Tests/test_Entrez.py | |
| Tests/test_Entrez_online.py | |
| Tests/test_Entrez_parser.py | |
| Tests/test_Enzyme.py | |
| Tests/test_ExPASy.py | |
| Tests/test_Fasttree_tool.py | |
| Tests/test_File.py | |
| Tests/test_GenBank.py | |
| Tests/test_GenomeDiagram.py | |
| Tests/test_GraphicsBitmaps.py | |
| Tests/test_GraphicsChromosome.py | |
| Tests/test_GraphicsDistribution.py | |
| Tests/test_GraphicsGeneral.py | |
| Tests/test_HMMCasino.py | |
| Tests/test_HMMGeneral.py | |
| Tests/test_KEGG.py | |
| Tests/test_KEGG_online.py | |
| Tests/test_KGML_graphics.py | |
| Tests/test_KGML_graphics_online.py | |
| Tests/test_KGML_nographics.py | |
| Tests/test_KeyWList.py | |
| Tests/test_LogisticRegression.py | |
| Tests/test_MSAProbs_tool.py | |
| Tests/test_MafIO_index.py | |
| Tests/test_Mafft_tool.py | |
| Tests/test_MarkovModel.py | |
| Tests/test_Medline.py | |
| Tests/test_Muscle_tool.py | |
| Tests/test_NCBITextParser.py | |
| Tests/test_NCBIXML.py | |
| Tests/test_NCBI_BLAST_tools.py | |
| Tests/test_NCBI_qblast.py | |
| Tests/test_NMR.py | |
| Tests/test_NaiveBayes.py | |
| Tests/test_Nexus.py | |
| Tests/test_PAML_baseml.py | |
| Tests/test_PAML_codeml.py | |
| Tests/test_PAML_tools.py | |
| Tests/test_PAML_yn00.py | |
| Tests/test_PDBList.py | |
| Tests/test_PDB_CEAligner.py | |
| Tests/test_PDB_DSSP.py | |
| Tests/test_PDB_Dice.py | |
| Tests/test_PDB_Disordered.py | |
| Tests/test_PDB_Exposure.py | |
| Tests/test_PDB_FragmentMapper.py | |
| Tests/test_PDB_KDTree.py | |
| Tests/test_PDB_MMCIF2Dict.py | |
| Tests/test_PDB_MMCIFIO.py | |
| Tests/test_PDB_MMCIFParser.py | |
| Tests/test_PDB_NACCESS.py | |
| Tests/test_PDB_PDBIO.py | |
| Tests/test_PDB_PDBParser.py | |
| Tests/test_PDB_PSEA.py | |
| Tests/test_PDB_Polypeptide.py | |
| Tests/test_PDB_QCSuperimposer.py | |
| Tests/test_PDB_ResidueDepth.py | |
| Tests/test_PDB_SASA.py | |
| Tests/test_PDB_SMCRA.py | |
| Tests/test_PDB_Selection.py | |
| Tests/test_PDB_StructureAlignment.py | |
| Tests/test_PDB_Superimposer.py | |
| Tests/test_PDB_internal_coords.py | |
| Tests/test_PDB_parse_pdb_header.py | |
| Tests/test_PDB_vectors.py | |
| Tests/test_PQR.py | |
| Tests/test_Pathway.py | |
| Tests/test_Phd.py | |
| Tests/test_Phylo.py | |
| Tests/test_PhyloXML.py | |
| Tests/test_Phylo_CDAO.py | |
| Tests/test_Phylo_NeXML.py | |
| Tests/test_Phylo_matplotlib.py | |
| Tests/test_Phylo_networkx.py | |
| Tests/test_PopGen_GenePop.py | |
| Tests/test_PopGen_GenePop_EasyController.py | |
| Tests/test_PopGen_GenePop_nodepend.py | |
| Tests/test_Prank_tool.py | |
| Tests/test_Probcons_tool.py | |
| Tests/test_ProtParam.py | |
| Tests/test_RCSBFormats.py | |
| Tests/test_Restriction.py | |
| Tests/test_SCOP_Astral.py | |
| Tests/test_SCOP_Cla.py | |
| Tests/test_SCOP_Des.py | |
| Tests/test_SCOP_Dom.py | |
| Tests/test_SCOP_Hie.py | |
| Tests/test_SCOP_Raf.py | |
| Tests/test_SCOP_Residues.py | |
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| Tests/test_SCOP_online.py | |
| Tests/test_SVDSuperimposer.py | |
| Tests/test_SearchIO_blast_tab.py | |
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| Tests/test_SearchIO_blast_text.py | |
| Tests/test_SearchIO_blast_xml.py | |
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| Tests/test_SearchIO_blat_psl.py | |
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| Tests/test_SearchIO_exonerate_vulgar_index.py | |
| Tests/test_SearchIO_fasta_m10.py | |
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| Tests/test_SearchIO_hhsuite2_text.py | |
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| Tests/test_SearchIO_hmmer3_domtab.py | |
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| Tests/test_SearchIO_hmmer3_text.py | |
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| Tests/test_SearchIO_interproscan_xml.py | |
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| Tests/test_SearchIO_model.py | |
| Tests/test_SearchIO_write.py | |
| Tests/test_SeqFeature.py | |
| Tests/test_SeqIO.py | |
| Tests/test_SeqIO_AbiIO.py | |
| Tests/test_SeqIO_FastaIO.py | |
| Tests/test_SeqIO_Gck.py | |
| Tests/test_SeqIO_Insdc.py | |
| Tests/test_SeqIO_NibIO.py | |
| Tests/test_SeqIO_PdbIO.py | |
| Tests/test_SeqIO_QualityIO.py | |
| Tests/test_SeqIO_SeqXML.py | |
| Tests/test_SeqIO_SnapGene.py | |
| Tests/test_SeqIO_TwoBitIO.py | |
| Tests/test_SeqIO_Xdna.py | |
| Tests/test_SeqIO_features.py | |
| Tests/test_SeqIO_index.py | |
| Tests/test_SeqIO_online.py | |
| Tests/test_SeqIO_write.py | |
| Tests/test_SeqRecord.py | |
| Tests/test_SeqUtils.py | |
| Tests/test_Seq_objs.py | |
| Tests/test_SffIO.py | |
| Tests/test_SwissProt.py | |
| Tests/test_TCoffee_tool.py | |
| Tests/test_TogoWS.py | |
| Tests/test_TreeConstruction.py | |
| Tests/test_Tutorial.py | |
| Tests/test_UniGene.py | |
| Tests/test_UniProt_GOA.py | |
| Tests/test_Uniprot.py | |
| Tests/test_Wise.py | |
| Tests/test_XXmotif_tool.py | |
| Tests/test_align.py | |
| Tests/test_align_substitution_matrices.py | |
| Tests/test_bgzf.py | |
| Tests/test_cellosaurus.py | |
| Tests/test_codonalign.py | |
| Tests/test_geo.py | |
| Tests/test_kNN.py | |
| Tests/test_mmtf.py | |
| Tests/test_mmtf_online.py | |
| Tests/test_motifs.py | |
| Tests/test_motifs_online.py | |
| Tests/test_pairwise2.py | |
| Tests/test_pairwise2_no_C.py | |
| Tests/test_pairwise_aligner.py | |
| Tests/test_pairwise_alignment_map.py | |
| Tests/test_phenotype.py | |
| Tests/test_phenotype_fit.py | |
| Tests/test_phyml_tool.py | |
| Tests/test_prodoc.py | |
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| Tests/test_raxml_tool.py | |
| Tests/test_samtools_tool.py | |
| Tests/test_seq.py | |
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| Tests/Abi/310.ab1 | |
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| Tests/Abi/A6_1-DB3.ab1 | |
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| Tests/Ace/consed_sample.ace | |
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| Tests/Affy/affy_v3_example.CEL | |
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| Tests/Align/bsubtilis.fa | |
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| Tests/Align/hg38.chrom.sizes | |
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| Tests/BWA/HNSCC1_1_truncated.fastq | |
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| Tests/BWA/human_g1k_v37_truncated.fasta | |
| Tests/BioSQL/biosqldb-mysql.sql | |
| Tests/BioSQL/biosqldb-pg.sql | |
| Tests/BioSQL/biosqldb-sqlite.sql | |
| Tests/BioSQL/cor6_6.db | |
| Tests/Blast/README.txt | |
| Tests/Blast/html_msgid_29_blastx_001.html | |
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| Tests/Blat/CAG33136.1.fasta | |
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| Tests/Cellosaurus/cell_lines_1.txt | |
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| Tests/Enzymes/lactate.txt | |
| Tests/Enzymes/lipoprotein.txt | |
| Tests/Enzymes/proline.txt | |
| Tests/Enzymes/valine.txt | |
| Tests/Exonerate/README.txt | |
| Tests/Exonerate/exn_22_m_affine_local.exn | |
| Tests/Exonerate/exn_22_m_affine_local_cigar.exn | |
| Tests/Exonerate/exn_22_m_affine_local_vulgar.exn | |
| Tests/Exonerate/exn_22_m_cdna2genome.exn | |
| Tests/Exonerate/exn_22_m_cdna2genome_cigar.exn | |
| Tests/Exonerate/exn_22_m_cdna2genome_vulgar.exn | |
| Tests/Exonerate/exn_22_m_cigar_fshifts.exn | |
| Tests/Exonerate/exn_22_m_coding2coding.exn | |
| Tests/Exonerate/exn_22_m_coding2coding_cigar.exn | |
| Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn | |
| Tests/Exonerate/exn_22_m_coding2coding_vulgar.exn | |
| Tests/Exonerate/exn_22_m_coding2genome.exn | |
| Tests/Exonerate/exn_22_m_coding2genome_cigar.exn | |
| Tests/Exonerate/exn_22_m_coding2genome_vulgar.exn | |
| Tests/Exonerate/exn_22_m_dna2protein.exn | |
| Tests/Exonerate/exn_22_m_dna2protein_cigar.exn | |
| Tests/Exonerate/exn_22_m_dna2protein_vulgar.exn | |
| Tests/Exonerate/exn_22_m_est2genome.exn | |
| Tests/Exonerate/exn_22_m_est2genome_cigar.exn | |
| Tests/Exonerate/exn_22_m_est2genome_vulgar.exn | |
| Tests/Exonerate/exn_22_m_genome2genome.exn | |
| Tests/Exonerate/exn_22_m_ner.exn | |
| Tests/Exonerate/exn_22_m_ner_cigar.exn | |
| Tests/Exonerate/exn_22_m_ner_vulgar.exn | |
| Tests/Exonerate/exn_22_m_protein2dna.exn | |
| Tests/Exonerate/exn_22_m_protein2dna_cigar.exn | |
| Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn | |
| Tests/Exonerate/exn_22_m_protein2dna_vulgar.exn | |
| Tests/Exonerate/exn_22_m_protein2genome.exn | |
| Tests/Exonerate/exn_22_m_protein2genome_cigar.exn | |
| Tests/Exonerate/exn_22_m_protein2genome_vulgar.exn | |
| Tests/Exonerate/exn_22_m_ungapped.exn | |
| Tests/Exonerate/exn_22_m_ungapped_cigar.exn | |
| Tests/Exonerate/exn_22_m_ungapped_trans.exn | |
| Tests/Exonerate/exn_22_m_ungapped_trans_cigar.exn | |
| Tests/Exonerate/exn_22_m_ungapped_trans_vulgar.exn | |
| Tests/Exonerate/exn_22_m_ungapped_vulgar.exn | |
| Tests/Exonerate/exn_22_o_cigar_fshifts2.exn | |
| Tests/Exonerate/exn_22_o_vulgar.exn | |
| Tests/Exonerate/exn_22_o_vulgar_cigar.exn | |
| Tests/Exonerate/exn_22_o_vulgar_fshifts.exn | |
| Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn | |
| Tests/Exonerate/exn_22_q_multiple.exn | |
| Tests/Exonerate/exn_22_q_multiple_cigar.exn | |
| Tests/Exonerate/exn_22_q_multiple_vulgar.exn | |
| Tests/Exonerate/exn_22_q_none.exn | |
| Tests/Exonerate/exn_24_m_protein2genome_met_intron.exn | |
| Tests/Exonerate/exn_24_m_protein2genome_met_intron_cigar.exn | |
| Tests/Exonerate/exn_24_m_protein2genome_met_intron_vulgar.exn | |
| Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts.exn | |
| Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts_cigar.exn | |
| Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts_vulgar.exn | |
| Tests/ExtendedPhylip/primates.phyx | |
| Tests/FSSP/1cnv.fssp | |
| Tests/Fasta/README | |
| Tests/Fasta/aster.pro | |
| Tests/Fasta/aster_no_wrap.pro | |
| Tests/Fasta/centaurea.nu | |
| Tests/Fasta/dups.fasta | |
| Tests/Fasta/elderberry.nu | |
| Tests/Fasta/f001 | |
| Tests/Fasta/f002 | |
| Tests/Fasta/f003 | |
| Tests/Fasta/fa01 | |
| Tests/Fasta/flowers.pro.gz | |
| Tests/Fasta/lavender.nu | |
| Tests/Fasta/loveliesbleeding.pro | |
| Tests/Fasta/lupine.nu | |
| Tests/Fasta/nucleotide_lib.fa | |
| Tests/Fasta/nucleotide_m8CB.txt | |
| Tests/Fasta/nucleotide_m8CC.txt | |
| Tests/Fasta/output001.m10 | |
| Tests/Fasta/output002.m10 | |
| Tests/Fasta/output003.m10 | |
| Tests/Fasta/output004.m10 | |
| Tests/Fasta/output005.m10 | |
| Tests/Fasta/output006.m10 | |
| Tests/Fasta/output007.m10 | |
| Tests/Fasta/output008.m10 | |
| Tests/Fasta/output009.m10 | |
| Tests/Fasta/output010.m10 | |
| Tests/Fasta/output011.m10 | |
| Tests/Fasta/output012.m10 | |
| Tests/Fasta/output013.m10 | |
| Tests/Fasta/output014.m10 | |
| Tests/Fasta/output015.m10 | |
| Tests/Fasta/output016.m10 | |
| Tests/Fasta/phlox.nu | |
| Tests/Fasta/protein_lib.fa | |
| Tests/Fasta/protein_m8CB.txt | |
| Tests/Fasta/protein_m8CC.txt | |
| Tests/Fasta/rose.pro | |
| Tests/Fasta/rosemary.pro | |
| Tests/Fasta/sweetpea.nu | |
| Tests/Fasta/wisteria.nu | |
| Tests/GFF/NC_001422.gbk | |
| Tests/GFF/NC_001802.fna | |
| Tests/GFF/NC_001802lc.fna | |
| Tests/GFF/NC_001802x.fna | |
| Tests/GFF/multi.fna | |
| Tests/Gck/artificial.gck | |
| Tests/GenBank/1MRR_A.gp | |
| Tests/GenBank/DS830848.gb | |
| Tests/GenBank/EU851978.gbk | |
| Tests/GenBank/EU851978_output.gbk | |
| Tests/GenBank/GU949562.1.gb | |
| Tests/GenBank/HM138502.gbk | |
| Tests/GenBank/HM138502_output.gbk | |
| Tests/GenBank/KF527485.gbk | |
| Tests/GenBank/KF527485_output.gbk | |
| Tests/GenBank/NC_000932.faa | |
| Tests/GenBank/NC_000932.gb | |
| Tests/GenBank/NC_000932.gb.bgz | |
| Tests/GenBank/NC_005816.faa | |
| Tests/GenBank/NC_005816.ffn | |
| Tests/GenBank/NC_005816.fna | |
| Tests/GenBank/NC_005816.gb | |
| Tests/GenBank/NC_005816.tsv | |
| Tests/GenBank/NP_416719.gbwithparts | |
| Tests/GenBank/NT_019265.gb | |
| Tests/GenBank/addgene-plasmid-11664-sequence-180430.gbk | |
| Tests/GenBank/addgene-plasmid-39296-sequence-49545.gbk | |
| Tests/GenBank/arab1.gb | |
| Tests/GenBank/bad_loc_wrap.gb | |
| Tests/GenBank/bad_origin_wrap.gb | |
| Tests/GenBank/bad_origin_wrap_CDS.gb | |
| Tests/GenBank/bad_origin_wrap_fuzzy.gb | |
| Tests/GenBank/bad_origin_wrap_linear.gb | |
| Tests/GenBank/blank_seq.gb | |
| Tests/GenBank/cor6_6.gb | |
| Tests/GenBank/cor6_6.gb.bgz | |
| Tests/GenBank/dbsource_wrap.gb | |
| Tests/GenBank/empty_accession.gbk | |
| Tests/GenBank/empty_feature_qualifier.gb | |
| Tests/GenBank/empty_version.gbk | |
| Tests/GenBank/extra_keywords.gb | |
| Tests/GenBank/gbvrl1_start.seq | |
| Tests/GenBank/invalid_locus_line_spacing.gb | |
| Tests/GenBank/invalid_misc_feature.gb | |
| Tests/GenBank/invalid_product.gb | |
| Tests/GenBank/invalid_structured_comment.gb | |
| Tests/GenBank/iro.gb | |
| Tests/GenBank/negative_location.gb | |
| Tests/GenBank/no_end_marker.gb | |
| Tests/GenBank/no_origin_no_end.gb | |
| Tests/GenBank/noref.gb | |
| Tests/GenBank/one_of.gb | |
| Tests/GenBank/origin_line.gb | |
| Tests/GenBank/pBAD30.gb | |
| Tests/GenBank/pri1.gb | |
| Tests/GenBank/protein_refseq.gb | |
| Tests/GenBank/protein_refseq2.gb | |
| Tests/GenBank/qualifier_escaping_read.gb | |
| Tests/GenBank/qualifier_escaping_write.gb | |
| Tests/GenBank/tls_KDHP01000000.gb | |
| Tests/GenBank/tsa_acropora.gb | |
| Tests/GenBank/wrong_sequence_indent.gb | |
| Tests/Geo/GSE16.txt | |
| Tests/Geo/GSM645.txt | |
| Tests/Geo/GSM691.txt | |
| Tests/Geo/GSM700.txt | |
| Tests/Geo/GSM804.txt | |
| Tests/Geo/soft_ex_affy.txt | |
| Tests/Geo/soft_ex_affy_chp.txt | |
| Tests/Geo/soft_ex_dual.txt | |
| Tests/Geo/soft_ex_family.txt | |
| Tests/Geo/soft_ex_platform.txt | |
| Tests/Geo/soft_ex_series.txt | |
| Tests/Graphics/README | |
| Tests/HHsuite/2uvo_hhblits.hhr | |
| Tests/HHsuite/2uvo_hhblits_emptytable.hhr | |
| Tests/HHsuite/2uvo_hhblits_onlyheader.hhr | |
| Tests/HHsuite/2uvo_hhsearch.hhr | |
| Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr | |
| Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr | |
| Tests/HHsuite/README.txt | |
| Tests/HHsuite/allx.hhr | |
| Tests/HHsuite/hhpred_9590198.hhr | |
| Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr | |
| Tests/Hmmer/README.txt | |
| Tests/Hmmer/domtab_30_hmmscan_001.out | |
| Tests/Hmmer/domtab_30_hmmscan_002.out | |
| Tests/Hmmer/domtab_30_hmmscan_003.out | |
| Tests/Hmmer/domtab_30_hmmscan_004.out | |
| Tests/Hmmer/domtab_30_hmmsearch_001.out | |
| Tests/Hmmer/domtab_31b1_hmmscan_001.out | |
| Tests/Hmmer/domtab_31b1_hmmsearch_001.out | |
| Tests/Hmmer/tab_30_hmmscan_001.out | |
| Tests/Hmmer/tab_30_hmmscan_002.out | |
| Tests/Hmmer/tab_30_hmmscan_003.out | |
| Tests/Hmmer/tab_30_hmmscan_004.out | |
| Tests/Hmmer/tab_31b1_hmmscan_001.out | |
| Tests/Hmmer/tab_31b1_hmmsearch_001.out | |
| Tests/Hmmer/text_20_hmmsearch_001.out | |
| Tests/Hmmer/text_21_hmmpfam_001.out | |
| Tests/Hmmer/text_22_hmmpfam_001.out | |
| Tests/Hmmer/text_22_hmmsearch_001.out | |
| Tests/Hmmer/text_23_hmmpfam_001.out | |
| Tests/Hmmer/text_23_hmmpfam_002.out | |
| Tests/Hmmer/text_23_hmmpfam_003.out | |
| Tests/Hmmer/text_23_hmmpfam_004.out | |
| Tests/Hmmer/text_24_hmmpfam_001.out | |
| Tests/Hmmer/text_30_hmmscan_001.out | |
| Tests/Hmmer/text_30_hmmscan_002.out | |
| Tests/Hmmer/text_30_hmmscan_003.out | |
| Tests/Hmmer/text_30_hmmscan_004.out | |
| Tests/Hmmer/text_30_hmmscan_005.out | |
| Tests/Hmmer/text_30_hmmscan_006.out | |
| Tests/Hmmer/text_30_hmmscan_007.out | |
| Tests/Hmmer/text_30_hmmscan_008.out | |
| Tests/Hmmer/text_30_hmmscan_009.out | |
| Tests/Hmmer/text_30_hmmscan_010.out | |
| Tests/Hmmer/text_30_hmmsearch_001.out | |
| Tests/Hmmer/text_30_hmmsearch_002.out | |
| Tests/Hmmer/text_30_hmmsearch_003.out | |
| Tests/Hmmer/text_30_hmmsearch_004.out | |
| Tests/Hmmer/text_30_hmmsearch_005.out | |
| Tests/Hmmer/text_31b1_hmmscan_001.out | |
| Tests/Hmmer/text_31b1_hmmsearch_001.out | |
| Tests/Hmmer/text_31b2_hmmscan_001.out | |
| Tests/Hmmer/text_31b2_hmmsearch_001.out | |
| Tests/Hmmer/text_31b2_hmmsearch_002.out | |
| Tests/Hmmer/text_31b2_phmmer_001.out | |
| Tests/IntelliGenetics/TAT_mase_nuc.txt | |
| Tests/IntelliGenetics/VIF_mase-pro.txt | |
| Tests/IntelliGenetics/vpu_nucaligned.txt | |
| Tests/InterProScan/test_001.xml | |
| Tests/KEGG/compound.irregular | |
| Tests/KEGG/compound.sample | |
| Tests/KEGG/enzyme.4letter | |
| Tests/KEGG/enzyme.irregular | |
| Tests/KEGG/enzyme.new | |
| Tests/KEGG/enzyme.sample | |
| Tests/KEGG/gene.sample | |
| Tests/KEGG/ko00010.xml | |
| Tests/KEGG/ko00253.xml | |
| Tests/KEGG/ko01100.xml | |
| Tests/KEGG/ko03070.xml | |
| Tests/KEGG/map00950.rea | |
| Tests/KEGG/map01100.png | |
| Tests/KEGG/map03070.png | |
| Tests/MAF/bug2453.maf | |
| Tests/MAF/bundle_without_target.bb | |
| Tests/MAF/bundle_without_target.maf | |
| Tests/MAF/cnksr3.fa | |
| Tests/MAF/corrupt.idx | |
| Tests/MAF/humor.maf | |
| Tests/MAF/invalid.idx | |
| Tests/MAF/length_coords_mismatch.maf | |
| Tests/MAF/ucsc_mm9_chr10.bb | |
| Tests/MAF/ucsc_mm9_chr10.maf | |
| Tests/MAF/ucsc_mm9_chr10.mafindex | |
| Tests/MAF/ucsc_mm9_chr10_bad.maf | |
| Tests/MAF/ucsc_mm9_chr10_bad.mafindex | |
| Tests/MAF/ucsc_mm9_chr10_big.maf | |
| Tests/MAF/ucsc_mm9_chr10_big.mafindex | |
| Tests/MAF/ucsc_test.bb | |
| Tests/MAF/ucsc_test.maf | |
| Tests/MAF/unfinished.idx | |
| Tests/MAF/wrong_version.idx | |
| Tests/Mauve/canFam2.fa | |
| Tests/Mauve/combined.fa | |
| Tests/Mauve/combined.xmfa | |
| Tests/Mauve/combined.xmfa.backbone | |
| Tests/Mauve/combined.xmfa.bbcols | |
| Tests/Mauve/equCab1.fa | |
| Tests/Mauve/mm9.fa | |
| Tests/Mauve/separate.xmfa | |
| Tests/Mauve/separate.xmfa.backbone | |
| Tests/Mauve/separate.xmfa.bbcols | |
| Tests/Mauve/simple.fa | |
| Tests/Mauve/simple.xmfa | |
| Tests/Mauve/simple.xmfa.backbone | |
| Tests/Mauve/simple.xmfa.bbcols | |
| Tests/Mauve/simple_short.xmfa | |
| Tests/Medline/pubmed_result1.txt | |
| Tests/Medline/pubmed_result2.txt | |
| Tests/Medline/pubmed_result3.txt | |
| Tests/MetaTool/Meta3.out | |
| Tests/MetaTool/Meta4.out | |
| Tests/MetaTool/Meta6.out | |
| Tests/MetaTool/Meta7.out | |
| Tests/MetaTool/Meta8.out | |
| Tests/MetaTool/meta.out | |
| Tests/MetaTool/meta2.out | |
| Tests/MetaTool/meta9.out | |
| Tests/NBRF/B_nuc.pir | |
| Tests/NBRF/Cw_prot.pir | |
| Tests/NBRF/DMA_nuc.pir | |
| Tests/NBRF/DMB_prot.pir | |
| Tests/NBRF/clustalw.pir | |
| Tests/NMR/noed.xpk | |
| Tests/NMR/out_example.xpk | |
| Tests/NeXML/characters.xml | |
| Tests/NeXML/edgelabels.xml | |
| Tests/NeXML/meta_taxa.xml | |
| Tests/NeXML/meta_types.xml | |
| Tests/NeXML/nexml.xml | |
| Tests/NeXML/phenoscape.xml | |
| Tests/NeXML/sets.xml | |
| Tests/NeXML/taxa.xml | |
| Tests/NeXML/timetree.xml | |
| Tests/NeXML/tolweb.xml | |
| Tests/NeXML/treebase-record.xml | |
| Tests/NeXML/trees-uris.xml | |
| Tests/NeXML/trees.xml | |
| Tests/NeuralNetwork/enolase.fasta | |
| Tests/NeuralNetwork/repeat.fasta | |
| Tests/Nexus/ByteOrderMarkFile.nwk | |
| Tests/Nexus/bats.nex | |
| Tests/Nexus/codonposset.nex | |
| Tests/Nexus/int_node_labels.nwk | |
| Tests/Nexus/test.new | |
| Tests/Nexus/test_Nexus_input.nex | |
| Tests/Nexus/vSysLab_Ganaspidium_multistate.nex | |
| Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex | |
| Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex | |
| Tests/Nib/test_even.fa | |
| Tests/Nib/test_even_bigendian.nib | |
| Tests/Nib/test_even_littleendian.nib | |
| Tests/Nib/test_odd.fa | |
| Tests/Nib/test_odd_bigendian.nib | |
| Tests/Nib/test_odd_littleendian.nib | |
| Tests/PAML/gen_results.py | |
| Tests/PAML/Alignments/aa_alignment.phylip | |
| Tests/PAML/Alignments/alignment.phylip | |
| Tests/PAML/Alignments/dottednames.phylip | |
| Tests/PAML/Alignments/dottednum.fasta | |
| Tests/PAML/Alignments/longnames.fasta | |
| Tests/PAML/Alignments/lysinYangSwanson2002.nuc | |
| Tests/PAML/Control_files/README.txt | |
| Tests/PAML/Control_files/bad1.ctl | |
| Tests/PAML/Control_files/bad2.ctl | |
| Tests/PAML/Control_files/bad3.ctl | |
| Tests/PAML/Control_files/baseml.ctl | |
| Tests/PAML/Control_files/species.tree | |
| Tests/PAML/Control_files/yn00.ctl | |
| Tests/PAML/Control_files/baseml/SE.ctl | |
| Tests/PAML/Control_files/baseml/alpha1rho1.ctl | |
| Tests/PAML/Control_files/baseml/baseml.ctl | |
| Tests/PAML/Control_files/baseml/model0.ctl | |
| Tests/PAML/Control_files/baseml/model1.ctl | |
| Tests/PAML/Control_files/baseml/model2.ctl | |
| Tests/PAML/Control_files/baseml/model3.ctl | |
| Tests/PAML/Control_files/baseml/model4.ctl | |
| Tests/PAML/Control_files/baseml/model5.ctl | |
| Tests/PAML/Control_files/baseml/model6.ctl | |
| Tests/PAML/Control_files/baseml/model7.ctl | |
| Tests/PAML/Control_files/baseml/model8.ctl | |
| Tests/PAML/Control_files/baseml/nhomo1.ctl | |
| Tests/PAML/Control_files/baseml/nhomo3.ctl | |
| Tests/PAML/Control_files/baseml/nhomo4.ctl | |
| Tests/PAML/Control_files/baseml/nparK1.ctl | |
| Tests/PAML/Control_files/baseml/nparK2.ctl | |
| Tests/PAML/Control_files/baseml/nparK3.ctl | |
| Tests/PAML/Control_files/baseml/nparK4.ctl | |
| Tests/PAML/Control_files/codeml/NSsite3.ctl | |
| Tests/PAML/Control_files/codeml/SE.ctl | |
| Tests/PAML/Control_files/codeml/aa_model0.ctl | |
| Tests/PAML/Control_files/codeml/aa_pairwise.ctl | |
| Tests/PAML/Control_files/codeml/all_NSsites.ctl | |
| Tests/PAML/Control_files/codeml/branchsiteA.ctl | |
| Tests/PAML/Control_files/codeml/clademodelC.ctl | |
| Tests/PAML/Control_files/codeml/codeml.ctl | |
| Tests/PAML/Control_files/codeml/freeratio.ctl | |
| Tests/PAML/Control_files/codeml/m2a_rel.ctl | |
| Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl | |
| Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl | |
| Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl | |
| Tests/PAML/Control_files/codeml/pairwise.ctl | |
| Tests/PAML/Control_files/yn00/yn00.ctl | |
| Tests/PAML/Control_files/yn00/yn00_dotted.ctl | |
| Tests/PAML/Control_files/yn00/yn00_dottednum.ctl | |
| Tests/PAML/Control_files/yn00/yn00_long.ctl | |
| Tests/PAML/Results/bad_results.out | |
| Tests/PAML/Results/baseml/baseml_SE.out | |
| Tests/PAML/Results/baseml/baseml_alpha1rho1.out | |
| Tests/PAML/Results/baseml/SE/SE-4_1.out | |
| Tests/PAML/Results/baseml/SE/SE-4_3.out | |
| Tests/PAML/Results/baseml/SE/SE-4_4.out | |
| Tests/PAML/Results/baseml/SE/SE-4_4c.out | |
| Tests/PAML/Results/baseml/SE/SE-4_5.out | |
| Tests/PAML/Results/baseml/SE/SE-4_6.out | |
| Tests/PAML/Results/baseml/SE/SE-4_7.out | |
| Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out | |
| Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out | |
| Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out | |
| Tests/PAML/Results/baseml/model/model0-4_1.out | |
| Tests/PAML/Results/baseml/model/model0-4_3.out | |
| Tests/PAML/Results/baseml/model/model0-4_4.out | |
| Tests/PAML/Results/baseml/model/model0-4_4c.out | |
| Tests/PAML/Results/baseml/model/model0-4_5.out | |
| Tests/PAML/Results/baseml/model/model0-4_6.out | |
| Tests/PAML/Results/baseml/model/model0-4_7.out | |
| Tests/PAML/Results/baseml/model/model1-4_1.out | |
| Tests/PAML/Results/baseml/model/model1-4_3.out | |
| Tests/PAML/Results/baseml/model/model1-4_4.out | |
| Tests/PAML/Results/baseml/model/model1-4_4c.out | |
| Tests/PAML/Results/baseml/model/model1-4_5.out | |
| Tests/PAML/Results/baseml/model/model1-4_6.out | |
| Tests/PAML/Results/baseml/model/model1-4_7.out | |
| Tests/PAML/Results/baseml/model/model2-4_1.out | |
| Tests/PAML/Results/baseml/model/model2-4_3.out | |
| Tests/PAML/Results/baseml/model/model2-4_4.out | |
| Tests/PAML/Results/baseml/model/model2-4_4c.out | |
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| Tests/Rebase/crei.txt | |
| Tests/Rebase/foki.htm | |
| Tests/Rebase/foki.txt | |
| Tests/Rebase/pvuii.htm | |
| Tests/Rebase/pvuii.txt | |
| Tests/Rebase/taqi.htm | |
| Tests/Rebase/taqi.txt | |
| Tests/Registry/EDD_RAT.dat | |
| Tests/Registry/bt001 | |
| Tests/Registry/seqs.fasta | |
| Tests/Roche/E3MFGYR02_alt_index_at_end.sff | |
| Tests/Roche/E3MFGYR02_alt_index_at_start.sff | |
| Tests/Roche/E3MFGYR02_alt_index_in_middle.sff | |
| Tests/Roche/E3MFGYR02_index_at_start.sff | |
| Tests/Roche/E3MFGYR02_index_in_middle.sff | |
| Tests/Roche/E3MFGYR02_no_manifest.sff | |
| Tests/Roche/E3MFGYR02_random_10_reads.fasta | |
| Tests/Roche/E3MFGYR02_random_10_reads.qual | |
| Tests/Roche/E3MFGYR02_random_10_reads.sff | |
| Tests/Roche/E3MFGYR02_random_10_reads.sff.gz | |
| Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta | |
| Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual | |
| Tests/Roche/README.txt | |
| Tests/Roche/greek.sff | |
| Tests/Roche/invalid_greek_E3MFGYR02.sff | |
| Tests/Roche/invalid_paired_E3MFGYR02.sff | |
| Tests/Roche/paired.sff | |
| Tests/Roche/triple_sff.idx | |
| Tests/Roche/triple_sff_rel_paths.idx | |
| Tests/SCOP/dir.cla.scop.txt_test | |
| Tests/SCOP/dir.des.scop.txt_test | |
| Tests/SCOP/dir.hie.scop.txt_test | |
| Tests/SCOP/raftest.txt | |
| Tests/SCOP/testDom.txt | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id | |
| Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id | |
| Tests/Saf/saf1.txt | |
| Tests/SamBam/bam1.bam | |
| Tests/SamBam/bam1_sorted.bam | |
| Tests/SamBam/bam2.bam | |
| Tests/SamBam/bam2_sorted.bam | |
| Tests/SamBam/ex1.bam | |
| Tests/SamBam/ex1.fa | |
| Tests/SamBam/ex1.sam | |
| Tests/SamBam/ex1_header.bam | |
| Tests/SamBam/ex1_header.sam | |
| Tests/SamBam/ex1_refresh.bam | |
| Tests/SamBam/readme.txt | |
| Tests/SamBam/sam1.sam | |
| Tests/SamBam/sam2.sam | |
| Tests/SeqXML/corrupt_example1.xml | |
| Tests/SeqXML/corrupt_example2.xml | |
| Tests/SeqXML/dna_example.xml | |
| Tests/SeqXML/global_species_example.xml | |
| Tests/SeqXML/protein_example.xml | |
| Tests/SeqXML/rna_example.xml | |
| Tests/SnapGene/pFA-KanMX4.dna | |
| Tests/SnapGene/sample-d.dna | |
| Tests/SnapGene/sample-e.dna | |
| Tests/SnapGene/sample-f.dna | |
| Tests/Stockholm/cath1.sth | |
| Tests/Stockholm/cath2.sth | |
| Tests/Stockholm/cath3.sth | |
| Tests/Stockholm/example.sth | |
| Tests/Stockholm/funny.sth | |
| Tests/Stockholm/globins45.ali | |
| Tests/Stockholm/pfam1.seed.txt | |
| Tests/Stockholm/pfam2.seed.txt | |
| Tests/Stockholm/pfam3.seed.txt | |
| Tests/Stockholm/pfam4.seed.txt | |
| Tests/Stockholm/pfam5.seed.txt | |
| Tests/Stockholm/pfam6.seed.txt | |
| Tests/Stockholm/pfam7.seed.txt | |
| Tests/Stockholm/pfam8.seed.txt | |
| Tests/Stockholm/pfam9.seed.txt | |
| Tests/Stockholm/rfam1.seed.txt | |
| Tests/Stockholm/rfam2.seed.txt | |
| Tests/Stockholm/rfam3.seed.txt | |
| Tests/Stockholm/rfam4.seed.txt | |
| Tests/Stockholm/rfam5.seed.txt | |
| Tests/Stockholm/simple.sth | |
| Tests/SubsMat/aaDistrib.txt | |
| Tests/SubsMat/acc_rep_mat.pik | |
| Tests/SubsMat/protein_count.txt | |
| Tests/SubsMat/protein_freq.txt | |
| Tests/SubsMat/redAADistrib.txt | |
| Tests/SubsMat/redAltAADistrib.txt | |
| Tests/SwissProt/F2CXE6.txt | |
| Tests/SwissProt/F2CXE6.xml | |
| Tests/SwissProt/H2CNN8.txt | |
| Tests/SwissProt/H2CNN8.xml | |
| Tests/SwissProt/O23729.txt | |
| Tests/SwissProt/O95832.txt | |
| Tests/SwissProt/P04439.txt | |
| Tests/SwissProt/P0A186.txt | |
| Tests/SwissProt/P0CK95.txt | |
| Tests/SwissProt/P16235.txt | |
| Tests/SwissProt/P39896.txt | |
| Tests/SwissProt/P60137.txt | |
| Tests/SwissProt/P60904.txt | |
| Tests/SwissProt/P62258.txt | |
| Tests/SwissProt/P68308.txt | |
| Tests/SwissProt/P84001.xml | |
| Tests/SwissProt/P97881.xml | |
| Tests/SwissProt/Q13454.txt | |
| Tests/SwissProt/Q13639.txt | |
| Tests/SwissProt/Q13639.xml | |
| Tests/SwissProt/Q7Z739.txt | |
| Tests/SwissProt/R5HY77.xml | |
| Tests/SwissProt/README | |
| Tests/SwissProt/keywlist.txt | |
| Tests/SwissProt/keywlist2.txt | |
| Tests/SwissProt/multi_ex.fasta | |
| Tests/SwissProt/multi_ex.gff | |
| Tests/SwissProt/multi_ex.list | |
| Tests/SwissProt/multi_ex.rdf | |
| Tests/SwissProt/multi_ex.txt | |
| Tests/SwissProt/multi_ex.xml | |
| Tests/SwissProt/sp012 | |
| Tests/SwissProt/sp013 | |
| Tests/SwissProt/sp015 | |
| Tests/SwissProt/sp016 | |
| Tests/SwissProt/uni001 | |
| Tests/SwissProt/uni002 | |
| Tests/SwissProt/uni003 | |
| Tests/TreeConstruction/adam_refs.tre | |
| Tests/TreeConstruction/consensus_refs.tre | |
| Tests/TreeConstruction/majority_ref.tre | |
| Tests/TreeConstruction/msa.phy | |
| Tests/TreeConstruction/neighbor_trees.tre | |
| Tests/TreeConstruction/nj.tre | |
| Tests/TreeConstruction/nj_min.tre | |
| Tests/TreeConstruction/pars3.tre | |
| Tests/TreeConstruction/strict_refs.tre | |
| Tests/TreeConstruction/test.log | |
| Tests/TreeConstruction/trees.tre | |
| Tests/TreeConstruction/upgma.tre | |
| Tests/TwoBit/sequence.bigendian.2bit | |
| Tests/TwoBit/sequence.fa | |
| Tests/TwoBit/sequence.littleendian.2bit | |
| Tests/TwoBit/sequence.long.2bit | |
| Tests/UniGene/Eca.1.2425.data | |
| Tests/UniGene/Hs.2.data | |
| Tests/UniGene/Mdm_partial.data | |
| Tests/UniProt/gene_association.goa_yeast.1.gaf | |
| Tests/UniProt/goa_human_sample.gpi | |
| Tests/UniProt/goa_yeast.gaf | |
| Tests/UniProt/goa_yeast.gpa.59.gpa | |
| Tests/UniProt/gp_information.goa_yeast.28.gpi | |
| Tests/Wise/human_114_g01_exons.fna_01 | |
| Tests/Wise/human_114_g02_exons.fna_01 | |
| Tests/Xdna/sample-a.xdna | |
| Tests/Xdna/sample-b.xdna | |
| Tests/Xdna/sample-c.xprt | |
| Tests/codonalign/adh.aln | |
| Tests/codonalign/drosophilla.fasta | |
| Tests/codonalign/egfr_id | |
| Tests/codonalign/egfr_nucl.fa | |
| Tests/codonalign/egfr_pro.aln | |
| Tests/codonalign/nucl1.fa | |
| Tests/codonalign/nucl2.fa | |
| Tests/codonalign/nucl3.fa | |
| Tests/codonalign/nucl4.fa | |
| Tests/codonalign/nucl5.fa | |
| Tests/codonalign/pro1.aln | |
| Tests/codonalign/pro2.aln | |
| Tests/codonalign/pro3.aln | |
| Tests/codonalign/pro4.aln | |
| Tests/codonalign/pro5.aln | |
| Tests/motifs/Arnt.sites | |
| Tests/motifs/MA0056.1.transfac | |
| Tests/motifs/REB1.pfm | |
| Tests/motifs/SRF.pfm | |
| Tests/motifs/abdb.xms | |
| Tests/motifs/alignace.out | |
| Tests/motifs/clusterbuster.pfm | |
| Tests/motifs/clusterbuster.pfm.out | |
| Tests/motifs/fourcolumns.pfm | |
| Tests/motifs/fourrows.pfm | |
| Tests/motifs/mast.Klf1-200.cd.oops.xml.txt | |
| Tests/motifs/mast.Klf1-200.cd.oops.xml.xml | |
| Tests/motifs/mast.adh.de.oops.html.txt | |
| Tests/motifs/mast.adh.de.oops.html.xml | |
| Tests/motifs/mast.crp0.de.oops.txt.txt | |
| Tests/motifs/mast.crp0.de.oops.txt.xml | |
| Tests/motifs/meme.INO_up800.classic.oops.xml | |
| Tests/motifs/meme.adh.classic.oops.xml | |
| Tests/motifs/meme.farntrans5.classic.anr.xml | |
| Tests/motifs/meme.out | |
| Tests/motifs/meme.psp_test.classic.zoops.xml | |
| Tests/motifs/minimal_test.meme | |
| Tests/motifs/transfac.dat | |
| Tests/msf/DOA_prot.msf | |
| Tests/msf/W_prot.msf | |
| Tests/phenotype/BadPlate.json | |
| Tests/phenotype/Plate.json | |
| Tests/phenotype/Plate_2.json | |
| Tests/phenotype/Plates.csv | |
| Tests/phenotype/SmallPlate.json | |
| Tests/phenotype/SmallPlate_2.json | |
| Tests/phenotype/SmallPlates.csv | |
| biopython.egg-info/PKG-INFO | |
| biopython.egg-info/SOURCES.txt | |
| biopython.egg-info/dependency_links.txt | |
| biopython.egg-info/requires.txt | |
| biopython.egg-info/top_level.txt |