xrayreport / inference.py
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import os
import torch
import config
from utils import (
load_dataset,
get_model_instance,
load_checkpoint,
can_load_checkpoint,
normalize_text,
)
from PIL import Image
import torchvision.transforms as transforms
# Define device
DEVICE = 'cpu'
# Define image transformations (adjust based on training setup)
TRANSFORMS = transforms.Compose([
transforms.Resize((224, 224)), # Replace with your model's expected input size
transforms.ToTensor(),
transforms.Normalize(mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225]),
])
def load_model():
"""
Loads the model with the vocabulary and checkpoint.
"""
print("Loading dataset and vocabulary...")
dataset = load_dataset() # Load dataset to access vocabulary
vocabulary = dataset.vocab # Assuming 'vocab' is an attribute of the dataset
print("Initializing the model...")
model = get_model_instance(vocabulary) # Initialize the model
if can_load_checkpoint():
print("Loading checkpoint...")
load_checkpoint(model)
else:
print("No checkpoint found, starting with untrained model.")
model.eval() # Set the model to evaluation mode
print("Model is ready for inference.")
return model
def preprocess_image(image_path):
"""
Preprocess the input image for the model.
"""
print(f"Preprocessing image: {image_path}")
image = Image.open(image_path).convert("RGB") # Ensure RGB format
image = TRANSFORMS(image).unsqueeze(0) # Add batch dimension
return image.to(DEVICE)
def generate_report(model, image_path):
"""
Generates a report for a given image using the model.
"""
image = preprocess_image(image_path)
print("Generating report...")
with torch.no_grad():
# Assuming the model has a 'generate_caption' method
output = model.generate_caption(image, max_length=25)
report = " ".join(output)
print(f"Generated report: {report}")
return report
if __name__ == "__main__":
# Path to the checkpoint file
CHECKPOINT_PATH = config.CHECKPOINT_FILE # Ensure config.CHECKPOINT_FILE is correctly set
# Path to the input image
IMAGE_PATH = "./dataset/images/CXR1178_IM-0121-1001.png" # Replace with your image path
# Load the model
model = load_model()
# Ensure the image exists before inference
if os.path.exists(IMAGE_PATH):
report = generate_report(model, IMAGE_PATH)
print("Final Report:", report)
else:
print(f"Image not found at path: {IMAGE_PATH}")