Delete prepare_gbif_checklist.py

prepare_gbif_checklist.py

@@ -1,69 +0,0 @@
-#!/usr/bin/env python
-# coding: utf-8
-
-"""Prepare the GBIF checklist for the global moth model"""
-
-import os
-from pathlib import Path
-
-# System packages
-import pandas as pd
-
-# 3rd party packages
-from dotenv import load_dotenv
-
-# Load secrets and config from optional .env file
-load_dotenv()
-
-
-def remove_non_species_taxon(checklist: pd.DataFrame) -> pd.DataFrame:
-    """
-    Remove all non-species taxa from the checklist
-    """
-
-    # Keep only rows where the taxa rank is "SPECIES"
-    checklist = checklist.loc[checklist["taxonRank"] == "SPECIES"]
-
-    return checklist
-
-
-def remove_butterflies(checklist: pd.DataFrame) -> pd.DataFrame:
-    """
-    Remove all butterflies from the checklist
-    """
-
-    # List of butterfly families
-    butterfly_fm = [
-        "Hesperiidae",
-        "Lycaenidae",
-        "Nymphalidae",
-        "Papilionidae",
-        "Pieridae",
-        "Riodinidae",
-        "Hedylidae",
-    ]
-
-    # Remove butterfly families
-    checklist = checklist.loc[~checklist["family"].isin(butterfly_fm)]
-
-    return checklist
-
-
-if __name__ == "__main__":
-    GLOBAL_MODEL_DIR = os.getenv("GLOBAL_MODEL_DIR")
-
-    # Remove non-species taxa
-    checklist = "gbif_leps_checklist_07242024_original.csv"
-    checklist_pd = pd.read_csv(Path(GLOBAL_MODEL_DIR) / checklist)
-    leps_checklist_pd = remove_non_species_taxon(checklist_pd)
-    leps_checklist_pd.to_csv(
-        Path(GLOBAL_MODEL_DIR) / "gbif_leps_checklist_07242024.csv", index=False
-    )
-
-    # Remove butterflies
-    checklist = "gbif_leps_checklist_07242024.csv"
-    checklist_pd = pd.read_csv(Path(GLOBAL_MODEL_DIR) / checklist)
-    moth_checklist_pd = remove_butterflies(checklist_pd)
-    moth_checklist_pd.to_csv(
-        Path(GLOBAL_MODEL_DIR) / "gbif_moth_checklist_07242024.csv", index=False
-    )