import argparse import json import logging import os import random from itertools import chain from typing import Set import numpy as np import torch from rationale_benchmark.models.mlp import (AttentiveClassifier, BahadanauAttention, RNNEncoder, WordEmbedder) from rationale_benchmark.models.model_utils import extract_embeddings from rationale_benchmark.models.pipeline.evidence_classifier import \ train_evidence_classifier from rationale_benchmark.models.pipeline.evidence_identifier import \ train_evidence_identifier from rationale_benchmark.models.pipeline.pipeline_utils import decode from rationale_benchmark.utils import (intern_annotations, intern_documents, load_datasets, load_documents, write_jsonl) logging.basicConfig( level=logging.DEBUG, format="%(relativeCreated)6d %(threadName)s %(message)s" ) # let's make this more or less deterministic (not resistant to restarts) random.seed(12345) np.random.seed(67890) torch.manual_seed(10111213) torch.backends.cudnn.deterministic = True torch.backends.cudnn.benchmark = False def initialize_models( params: dict, vocab: Set[str], batch_first: bool, unk_token="UNK" ): # TODO this is obviously asking for some sort of dependency injection. implement if it saves me time. if "embedding_file" in params["embeddings"]: embeddings, word_interner, de_interner = extract_embeddings( vocab, params["embeddings"]["embedding_file"], unk_token=unk_token ) if torch.cuda.is_available(): embeddings = embeddings.cuda() else: raise ValueError("No 'embedding_file' found in params!") word_embedder = WordEmbedder(embeddings, params["embeddings"]["dropout"]) query_encoder = RNNEncoder( word_embedder, batch_first=batch_first, condition=False, attention_mechanism=BahadanauAttention(word_embedder.output_dimension), ) document_encoder = RNNEncoder( word_embedder, batch_first=batch_first, condition=True, attention_mechanism=BahadanauAttention( word_embedder.output_dimension, query_size=query_encoder.output_dimension ), ) evidence_identifier = AttentiveClassifier( document_encoder, query_encoder, 2, params["evidence_identifier"]["mlp_size"], params["evidence_identifier"]["dropout"], ) query_encoder = RNNEncoder( word_embedder, batch_first=batch_first, condition=False, attention_mechanism=BahadanauAttention(word_embedder.output_dimension), ) document_encoder = RNNEncoder( word_embedder, batch_first=batch_first, condition=True, attention_mechanism=BahadanauAttention( word_embedder.output_dimension, query_size=query_encoder.output_dimension ), ) evidence_classes = dict( (y, x) for (x, y) in enumerate(params["evidence_classifier"]["classes"]) ) evidence_classifier = AttentiveClassifier( document_encoder, query_encoder, len(evidence_classes), params["evidence_classifier"]["mlp_size"], params["evidence_classifier"]["dropout"], ) return ( evidence_identifier, evidence_classifier, word_interner, de_interner, evidence_classes, ) def main(): parser = argparse.ArgumentParser( description="""Trains a pipeline model. Step 1 is evidence identification, that is identify if a given sentence is evidence or not Step 2 is evidence classification, that is given an evidence sentence, classify the final outcome for the final task (e.g. sentiment or significance). These models should be separated into two separate steps, but at the moment: * prep data (load, intern documents, load json) * convert data for evidence identification - in the case of training data we take all the positives and sample some negatives * side note: this sampling is *somewhat* configurable and is done on a per-batch/epoch basis in order to gain a broader sampling of negative values. * train evidence identification * convert data for evidence classification - take all rationales + decisions and use this as input * train evidence classification * decode first the evidence, then run classification for each split """, formatter_class=argparse.RawTextHelpFormatter, ) parser.add_argument( "--data_dir", dest="data_dir", required=True, help="Which directory contains a {train,val,test}.jsonl file?", ) parser.add_argument( "--output_dir", dest="output_dir", required=True, help="Where shall we write intermediate models + final data to?", ) parser.add_argument( "--model_params", dest="model_params", required=True, help="JSoN file for loading arbitrary model parameters (e.g. optimizers, pre-saved files, etc.", ) args = parser.parse_args() BATCH_FIRST = True with open(args.model_params, "r") as fp: logging.debug(f"Loading model parameters from {args.model_params}") model_params = json.load(fp) train, val, test = load_datasets(args.data_dir) docids = set( e.docid for e in chain.from_iterable( chain.from_iterable(map(lambda ann: ann.evidences, chain(train, val, test))) ) ) documents = load_documents(args.data_dir, docids) document_vocab = set(chain.from_iterable(chain.from_iterable(documents.values()))) annotation_vocab = set( chain.from_iterable(e.query.split() for e in chain(train, val, test)) ) logging.debug( f"Loaded {len(documents)} documents with {len(document_vocab)} unique words" ) # this ignores the case where annotations don't align perfectly with token boundaries, but this isn't that important vocab = document_vocab | annotation_vocab unk_token = "UNK" ( evidence_identifier, evidence_classifier, word_interner, de_interner, evidence_classes, ) = initialize_models( model_params, vocab, batch_first=BATCH_FIRST, unk_token=unk_token ) logging.debug( f"Including annotations, we have {len(vocab)} total words in the data, with embeddings for {len(word_interner)}" ) interned_documents = intern_documents(documents, word_interner, unk_token) interned_train = intern_annotations(train, word_interner, unk_token) interned_val = intern_annotations(val, word_interner, unk_token) interned_test = intern_annotations(test, word_interner, unk_token) assert BATCH_FIRST # for correctness of the split dimension for DataParallel evidence_identifier, evidence_ident_results = train_evidence_identifier( evidence_identifier.cuda(), args.output_dir, interned_train, interned_val, interned_documents, model_params, tensorize_model_inputs=True, ) evidence_classifier, evidence_class_results = train_evidence_classifier( evidence_classifier.cuda(), args.output_dir, interned_train, interned_val, interned_documents, model_params, class_interner=evidence_classes, tensorize_model_inputs=True, ) pipeline_batch_size = min( [ model_params["evidence_classifier"]["batch_size"], model_params["evidence_identifier"]["batch_size"], ] ) pipeline_results, train_decoded, val_decoded, test_decoded = decode( evidence_identifier, evidence_classifier, interned_train, interned_val, interned_test, interned_documents, evidence_classes, pipeline_batch_size, tensorize_model_inputs=True, ) write_jsonl(train_decoded, os.path.join(args.output_dir, "train_decoded.jsonl")) write_jsonl(val_decoded, os.path.join(args.output_dir, "val_decoded.jsonl")) write_jsonl(test_decoded, os.path.join(args.output_dir, "test_decoded.jsonl")) with open( os.path.join(args.output_dir, "identifier_results.json"), "w" ) as ident_output, open( os.path.join(args.output_dir, "classifier_results.json"), "w" ) as class_output: ident_output.write(json.dumps(evidence_ident_results)) class_output.write(json.dumps(evidence_class_results)) for k, v in pipeline_results.items(): if type(v) is dict: for k1, v1 in v.items(): logging.info(f"Pipeline results for {k}, {k1}={v1}") else: logging.info(f"Pipeline results {k}\t={v}") if __name__ == "__main__": main()