toolchain/create_dir_struct_quest.py

import os

N_arr = range(6, 38, 2)
sim_pack = 'quest'
task = 'hdyn'
com_cap = 'mt'
prec = 'dp'

gen_path = '/data/user/gangap_a/{}_singular/gen_files/'.format(task)
sim_path = '/data/user/gangap_a/{}_singular/{}/'.format(task, sim_pack)

print(sim_path)

# os.chdir(sim_path)

print(' ############################ ')

print('### Create job scripts folder for package: {}, task: {},  compute cap: {}, precision: {}'.format(sim_pack, task, com_cap, prec))
job_scripts_path = sim_path+'job_scripts_{}_{}'.format(com_cap, prec)
print(job_scripts_path)
os.mkdir(job_scripts_path)

print('### Create job scripts')
os.chdir(job_scripts_path)
cjs = gen_path+'create_job_script.py {} {} {} {}'.format(sim_pack, task, com_cap, prec)
os.system('python3 {}'.format(cjs))

print(' ############################ ')

print('### Create bash scripts folder for package: {}, task:{},  compute cap:{}, precision {}'.format(sim_pack, task, com_cap, prec))
bash_scripts_path = sim_path+'bash_scripts_{}_{}'.format(com_cap, prec)
os.mkdir(bash_scripts_path)

print('### Create bash scripts')
os.chdir(bash_scripts_path)
cbs = gen_path+'create_bash_script.py {} {} {} {}'.format(sim_pack, task, com_cap, prec)
os.system('python3 {}'.format(cbs))

print(' ############################ ')

print('### Create output folder')
os.mkdir(sim_path+'output_{}_{}'.format(com_cap, prec))

print('### Create error folder')
os.mkdir(sim_path+'error_{}_{}'.format(com_cap, prec))

print('### Create data folder')
os.mkdir(sim_path+'data_{}_{}'.format(com_cap, prec))

print(' ############################ ')

print('### Create run files folder package: {}, task:{},  compute cap:{}, precision {}'.format(sim_pack, task, com_cap, prec))
run_files_path = sim_path+'run_files_{}_{}'.format(com_cap, prec)
os.mkdir(run_files_path)

sim_parser = input("Enter the python file including the path for the parser: ")
os.system('python3 {}'.format(sim_parser))

print(' ############################ ')

print('### Generate the CMakeLists.txt file and the bin_{}_{} folder'.format(com_cap, prec))

os.chdir(sim_path)

os.mkdir('bin_{}_{}'.format(com_cap, prec))

with open('CMakeLists.txt', 'w') as cml:
    cml.write('message(STATUS \"Compiling\")\n')
    cml.write('file( GLOB APP_SOURCES ${CMAKE_SOURCE_DIR}/' + 'run_files_{}_{}/*.cpp)\n'.format(com_cap, prec))

    cml.write('foreach( sourcefile ${APP_SOURCES} )\n')

    cml.write('file(RELATIVE_PATH filename ${CMAKE_SOURCE_DIR}/' + 'run_files_{}_{}'.format(com_cap, prec) + ' ${sourcefile})\n')
    cml.write('string( REPLACE \".cpp\" \"\" file ${filename} )\n')
    cml.write('add_executable( ${file} ${sourcefile} )\n')
    cml.write('target_link_libraries( ${file} PRIVATE iqs)\n')

    cml.write('set_target_properties(\n')
    cml.write('${file}\n')
    cml.write('PROPERTIES\n')
    cml.write('RUNTIME_OUTPUT_DIRECTORY "' + str("${CMAKE_SOURCE_DIR}") + '/bin_{}_{}\"\n'.format(com_cap, prec))
    cml.write(')\n')

    cml.write('endforeach( sourcefile ${APP_SOURCES} )\n')


print(' ############################ ')

print('### Create bash scripts to run jobs')
os.chdir(sim_path)

with open('run_jobs_{}_{}.sh'.format(com_cap, prec), 'w') as f:

    f.write('path=\"/data/user/gangap_a/{}_singular/{}/job_scripts_{}_{}\"\n'.format(task, sim_pack, com_cap, prec))
    f.write('cd $path\n')


    f.write('export APPTAINER_BIND=\"/data/user/gangap_a/{}_singular/quest/bash_scripts_{}_{}/:/brf,/data/user/gangap_a/{}_singular/quest/:/home\"\n'.format(task, com_cap, prec, task))
    f.write('singularity exec /data/user/gangap_a/singularity_images/qucos_sim.sif bash /brf/{}_{}_{}.sh\n'.format(task, com_cap, prec))

    f.write('for job_script in *.sh; do\n')
    f.write('echo $job_script;\n')
    f.write('sbatch $job_script;\n')
    f.write('done\n')