Andrea MH commited on
Commit
979c342
·
unverified ·
2 Parent(s): 35765eb 691d2fd

Merge pull request #15 from andreamalhera/10-feature-selection-visualisation-of-genel-target-diff

Browse files
.github/workflows/test_gedi.yml CHANGED
@@ -71,11 +71,11 @@ jobs:
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  - name: Compare output 3
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  run:
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- diff data/validation/genELexperiment3_04.json output/features/grid_feat/2_enself_rt20v/genELexperiment3_04_nan.json
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  - name: Compare output 4
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  run:
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- diff data/validation/genELexperiment4_02.json output/features/grid_feat/2_enself_rt20v/genELexperiment4_nan_02.json
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  test_benchmark:
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  runs-on: ubuntu-latest
 
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  - name: Compare output 3
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  run:
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+ diff data/validation/genELexperiment3_04_nan.json output/features/grid_feat/2_enself_rt20v/genELexperiment3_04_nan.json
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  - name: Compare output 4
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  run:
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+ diff data/validation/genELexperiment4_nan_02.json output/features/grid_feat/2_enself_rt20v/genELexperiment4_nan_02.json
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  test_benchmark:
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  runs-on: ubuntu-latest
data/validation/genELexperiment1_04_02.json CHANGED
@@ -1 +1 @@
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- {"ratio_top_20_variants": 0.20017714791851196, "epa_normalized_sequence_entropy_linear_forgetting": 0.052097205658647734, "log": "experiment1"}
 
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+ {"ratio_top_20_variants": 0.20017714791851196, "epa_normalized_sequence_entropy_linear_forgetting": 0.052097205658647734, "log": "genELexperiment1_04_02"}
data/validation/genELexperiment2_07_04.json CHANGED
@@ -1 +1 @@
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- {"ratio_top_20_variants": 0.38863337713534823, "epa_normalized_sequence_entropy_linear_forgetting": 0.052097205658647734, "log": "experiment2"}
 
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+ {"ratio_top_20_variants": 0.38863337713534823, "epa_normalized_sequence_entropy_linear_forgetting": 0.052097205658647734, "log": "genELexperiment2_07_04"}
data/validation/{genELexperiment3_04.json → genELexperiment3_04_nan.json} RENAMED
@@ -1 +1 @@
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- {"epa_normalized_sequence_entropy_linear_forgetting": 0.052097205658647734, "log": "experiment3"}
 
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+ {"epa_normalized_sequence_entropy_linear_forgetting": 0.052097205658647734, "log": "genELexperiment3_04_nan"}
data/validation/genELexperiment4_02.json DELETED
@@ -1 +0,0 @@
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- {"ratio_top_20_variants": 0.2, "log": "experiment4"}
 
 
data/validation/genELexperiment4_nan_02.json ADDED
@@ -0,0 +1 @@
 
 
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+ {"ratio_top_20_variants": 0.2, "log": "genELexperiment4_nan_02"}
gedi/generator.py CHANGED
@@ -220,8 +220,9 @@ class GenerateEventLogs():
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  #TODO: Replace hotfix
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  if features_to_dump.get('ratio_unique_traces_per_trace'):#HOTFIX
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  features_to_dump['ratio_variants_per_number_of_traces']=features_to_dump.pop('ratio_unique_traces_per_trace')
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- features_to_dump['log'] = identifier.replace('genEL', '')
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  dump_features_json(features_to_dump, save_path)
 
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  return log_config
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  def generate_optimized_log(self, config):
 
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  #TODO: Replace hotfix
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  if features_to_dump.get('ratio_unique_traces_per_trace'):#HOTFIX
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  features_to_dump['ratio_variants_per_number_of_traces']=features_to_dump.pop('ratio_unique_traces_per_trace')
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+ features_to_dump['log']= os.path.split(save_path)[1].split(".")[0]
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  dump_features_json(features_to_dump, save_path)
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+
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  return log_config
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  def generate_optimized_log(self, config):