Adds test for generation

.github/workflows/test_gedi.yml

@@ -8,7 +8,34 @@ on:
 
 # Specifies the jobs that are to be run
 jobs:
-  test:
+  test_generation:
+    runs-on: ubuntu-latest
+
+    # Setting up a python envronment  for the test script to run
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v2
+
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: 3.x
+
+    - name: Install dependencies
+      run: |
+        sudo apt install python3-packaging
+    - name: Install feeed
+      run: |
+        python -m pip install --upgrade pip
+        pip install .
+
+    - name: Run feature_extraction test
+      run:
+        python main.py -o config_files/options/baseline.json -a config_files/algorithm/generation.json
+
+    - name: Compare output
+      run: diff output/features/2_enself_rt20v/genEL2_02_07.json output/features/2_enself_rt20v/genEL2_02_07.json
+  test_feature-extraction:
     runs-on: ubuntu-latest
 
     # Setting up a python envronment  for the test script to run

README.md

@@ -32,7 +32,7 @@ python main.py -o config_files/options/baseline.json -a config_files/algorithm/e
 ## Usage
 Our pipeline offers several pipeline steps, which can be run sequentially or partially:
 - feature_extraction
-- event_logs_generation
+- generation
 - benchmark
 - evaluation_plotter
 

config_files/algorithm/generation.json

@@ -9,6 +9,10 @@
         "objectives": ["ratio_most_common_variant", "epa_normalized_sequence_entropy"], 
         "objectives": ["ratio_top_20_variants","epa_normalized_sequence_entropy_linear_forgetting"]
       },
+      "experiment": [
+          {"epa_normalized_sequence_entropy_linear_forgetting": 0.4, "ratio_top_20_variants": 0.2},
+          {"epa_normalized_sequence_entropy_linear_forgetting": 0.2, "ratio_top_20_variants": 0.7}
+        ],
       "config_space": {
         "mode": [5, 20],
         "sequence": [0.01, 1],