Minor clean up

Updating latest changes DDMR

Updating latest changes

Following TF deprecation warnings

Added "step" parameters to reduce the interpolation resolution and memory footprint

COMET train segmentation guided

Update

Update

Updated train scripts

# threads is automatically set using os.cpu_count()

Added the Method column to the CSV file, to distinguish better between SyN and SyNCC results

Renamed the folder to SoA_methods to hold the evaluation script of other methods

ANTs evaluation script

Added segmentation plots after evaluation

Added COMET zoom factors

Merge remote-tracking branch 'origin/master'

gitignore and requirements

Create README.md

ANTs script

CPD scripts

3D IRCA dataset formatting scripts

Scripts for training on the COMET CT Dataset

Scripts for training on the IXI T1 MRI Dataset

Update DeepDeformationMapRegistration package

Rolling average dynamic weight updating

Fxed Hausdorff implementation. The successive erosions were not applied to the eroded diff variable, but to the original diff variable (hence, no successive erosion was done at all)

Made HausdorffDistanceErosion channel sentinel.

Updated call to DataGeneratorManager

Generalized the DataGenerator to accept two lists of input and output (wrt network) labels to fetch from the dataset files.

Implemented NCC loss function

Quick cleanup of unused imports. Specially when importing TF

Added verbose option to save_nifti

Merge remote-tracking branch 'origin/WeaklySupervised' into WeaklySupervised

Train only on segmentation data

Removed NCC, training only on Hausdorff and DICE

Merge pull request #1 from jpdefrutosSINTEF/HausdorffConstantIndependent

Made HausdorffDistance independent of the package file constants

Missing a parenthesis when getting the normalizing factor

Added __init__.py file

Removed NCC, training only on Hausdorff and DICE

Missing extension

Renamed model

Initial commit