#!/bin/bash # Ensures that the main process runs as the DSA_USER and is part of both that # group and the docker group. Fail if DSA_USER is not specified. if [[ -z "$DSA_USER" ]]; then echo "Set the DSA_USER before starting (e.g, DSA_USER=\$$(id -u):\$$(id -g) " exit 1 fi # add a user with the DSA_USER's id; this user is named ubuntu if it doesn't # exist. adduser --uid ${DSA_USER%%:*} --disabled-password --gecos "" ubuntu 2>/dev/null # add a group with the DSA_USER's group id. addgroup --gid ${DSA_USER#*:} $(id -ng ${DSA_USER#*:}) 2>/dev/null # add the user to the user group. adduser $(id -nu ${DSA_USER%%:*}) $(getent group ${DSA_USER#*:} | cut "-d:" -f1) 2>/dev/null # add a group with the docker group id. addgroup --gid $(stat -c "%g" /var/run/docker.sock) docker 2>/dev/null # add the user to the docker group. adduser $(id -nu ${DSA_USER%%:*}) $(getent group $(stat -c "%g" /var/run/docker.sock) | cut "-d:" -f1) 2>/dev/null # Try to increase permissions for the docker socket; this helps this work on # OSX where the users don't translate chmod 777 /var/run/docker.sock 2>/dev/null || true chmod 777 ${TMPDIR:-/tmp} || true echo ==== Pre-Provisioning === python3 /opt/digital_slide_archive/devops/dsa/provision.py --worker-pre echo ==== Provisioning === && python3 /opt/digital_slide_archive/devops/dsa/provision.py --worker-main echo ==== Starting Worker === && # Run subsequent commands as the DSA_USER. This sets some paths based on what # is expected in the Docker so that the current python environment and the # devops/dsa/utils are available. Then it runs girder_worker su $(id -nu ${DSA_USER%%:*}) -c " PATH=\"/opt/digital_slide_archive/devops/dsa/utils:/opt/venv/bin:/.pyenv/bin:/.pyenv/shims:$PATH\"; DOCKER_CLIENT_TIMEOUT=86400 TMPDIR=${TMPDIR:-/tmp} GW_DIRECT_PATHS=true python -m girder_worker --concurrency=${DSA_WORKER_CONCURRENCY:-2} -Ofair --prefetch-multiplier=1 "