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README.md
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# Automatic liver segmentation in CT using deep learning
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[](https://github.com/DAVFoundation/captain-n3m0/blob/master/LICENSE)
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#### Trained
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<img src="figures/Segmentation_CustusX.PNG" width="70%" height="70%">
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## Usage:
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```
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git clone https://github.com/andreped/livermask.git
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cd livermask
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python -m venv venv
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python -m pip install -r /path/to/requirements.txt
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cd livermask
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python livermask.py "path_to_ct_nifti.nii" "output_name.nii"
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```
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If you lack any modules after, try installing them through setup.py (could be done instead of using requirements.txt):
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```
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pip install wheel
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python setup.py bdist_wheel
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```
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# Automatic liver segmentation in CT using deep learning
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[](https://github.com/DAVFoundation/captain-n3m0/blob/master/LICENSE)
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#### Trained U-Net on the LITS dataset is automatically downloaded when running the inference script and can be used as you wish, ENJOY! :)
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<img src="figures/Segmentation_CustusX.PNG" width="70%" height="70%">
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## Usage:
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```
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git clone https://github.com/andreped/livermask.git
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cd livermask
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python -m venv venv
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python -m pip install -r /path/to/requirements.txt
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cd livermask
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python livermask.py "path_to_ct_nifti.nii" "output_name.nii"
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```
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If you lack any modules after, try installing them through setup.py (could be done instead of using requirements.txt):
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```
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pip install wheel
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python setup.py bdist_wheel
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```
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