Commit History
filtered predicted vessels outside the predicted liver parenchyma region
8988f76
changed tqdm for vessel seg for consistency
0db97df
mp fix
31605b7
potential multiprocessing fix for macos
7c205cc
fix for chainer inference when cupy is not installed and cpu is not specific
224e8c1
working solution
f7fc178
typo
68ecff8
potential fix for path
f0851c4
fix for deadlock issue on macOSX
9f563e6
removed silly argument thingy. Refactored
b953767
more refactoring
dac5ddb
refactoring, adding informative prints for liver vessel segmentation in log, which supports verbose mode
b437043
finally working. Now the CLI properly installs using pip and it can be used without any dependency issues across all relevant operating systems
d1ff5ab
removed wrong import
d708d66
tried importing Config directly, instead of the script
1ff1479
test
82fe6a3
typo
d2c1bce
worked, now have to add similar fix for all scripts
6310170
added '.' to paths when importing
0b5ab50
tried removed redundant py_module
58c5660
added init file to module
1ca252a
moved file to utils
c1db270
tried fixing dependencies when installing
dacb584
Added option to segment the portal and hepatic veins (one class). Liver segmentation is now run in a separate Process, as TF is unable to clear the GPU manually - only when a session is killed, which is only when a Process is finished/killed.
362a9f8
typo fix '.ini' instead of '.nii'. Also fixed casting to reduce memory usage
841a460
added check to skip non-nifti files in for loop
a687f1a
added batch mode. Can now provide directory of CTs/.nii files to be predicted on. Also refactored build workflow
8a35a57
added checks
5f6ee91
CLI works well on Windows
2c24e9f
potential bug fix
dde96f8
debugging
82a07e9
added GPU support and bumped tensorflow to v2.4
2abae3a
improved argparse stuff
d21da4f
update name and added comment regarding GPU
4a775c0
testing proper CLI pip installable option
ac935be
Updated url to download model to working url
da41a29
Andre Pedersen
commited on