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""" | |
Define structure optimization tasks. | |
""" | |
from __future__ import annotations | |
from prefect import task | |
from prefect.cache_policies import INPUTS, TASK_SOURCE | |
from prefect.runtime import task_run | |
from ase import Atoms | |
from ase.constraints import FixSymmetry | |
from ase.filters import * # type: ignore | |
from ase.filters import Filter | |
from ase.optimize import * # type: ignore | |
from ase.optimize.optimize import Optimizer | |
from mlip_arena.models import MLIPEnum | |
from mlip_arena.tasks.utils import get_calculator, logger, pformat | |
_valid_filters: dict[str, Filter] = { | |
"Filter": Filter, | |
"UnitCell": UnitCellFilter, | |
"ExpCell": ExpCellFilter, | |
"Strain": StrainFilter, | |
"FrechetCell": FrechetCellFilter, | |
} # type: ignore | |
_valid_optimizers: dict[str, Optimizer] = { | |
"MDMin": MDMin, | |
"FIRE": FIRE, | |
"FIRE2": FIRE2, | |
"LBFGS": LBFGS, | |
"LBFGSLineSearch": LBFGSLineSearch, | |
"BFGS": BFGS, | |
"BFGSLineSearch": BFGSLineSearch, | |
"QuasiNewton": QuasiNewton, | |
"GPMin": GPMin, | |
"CellAwareBFGS": CellAwareBFGS, | |
"ODE12r": ODE12r, | |
} # type: ignore | |
def _generate_task_run_name(): | |
task_name = task_run.task_name | |
parameters = task_run.parameters | |
atoms = parameters["atoms"] | |
calculator_name = parameters["calculator_name"] | |
return f"{task_name}: {atoms.get_chemical_formula()} - {calculator_name}" | |
def run( | |
atoms: Atoms, | |
calculator_name: str | MLIPEnum, | |
calculator_kwargs: dict | None = None, | |
dispersion: bool = False, | |
dispersion_kwargs: dict | None = None, | |
device: str | None = None, | |
optimizer: Optimizer | str = BFGSLineSearch, | |
optimizer_kwargs: dict | None = None, | |
filter: Filter | str | None = None, | |
filter_kwargs: dict | None = None, | |
criterion: dict | None = None, | |
symmetry: bool = False, | |
): | |
atoms.calc = get_calculator( | |
calculator_name=calculator_name, | |
calculator_kwargs=calculator_kwargs, | |
dispersion=dispersion, | |
dispersion_kwargs=dispersion_kwargs, | |
device=device, | |
) | |
if isinstance(filter, str): | |
if filter not in _valid_filters: | |
raise ValueError(f"Invalid filter: {filter}") | |
filter = _valid_filters[filter] | |
if isinstance(optimizer, str): | |
if optimizer not in _valid_optimizers: | |
raise ValueError(f"Invalid optimizer: {optimizer}") | |
optimizer = _valid_optimizers[optimizer] | |
filter_kwargs = filter_kwargs or {} | |
optimizer_kwargs = optimizer_kwargs or {} | |
criterion = criterion or {} | |
if symmetry: | |
atoms.set_constraint(FixSymmetry(atoms)) | |
if isinstance(filter, type) and issubclass(filter, Filter): | |
filter_instance = filter(atoms, **filter_kwargs) | |
logger.info(f"Using filter: {filter_instance}") | |
logger.info(pformat(filter_kwargs)) | |
optimizer_instance = optimizer(filter_instance, **optimizer_kwargs) | |
logger.info(f"Using optimizer: {optimizer_instance}") | |
logger.info(pformat(optimizer_kwargs)) | |
logger.info(f"Criterion: {pformat(criterion)}") | |
optimizer_instance.run(**criterion) | |
elif filter is None: | |
optimizer_instance = optimizer(atoms, **optimizer_kwargs) | |
logger.info(f"Using optimizer: {optimizer_instance}") | |
logger.info(pformat(optimizer_kwargs)) | |
logger.info(f"Criterion: {pformat(criterion)}") | |
optimizer_instance.run(**criterion) | |
return { | |
"atoms": atoms, | |
} | |