Update app.py

app.py

@@ -198,12 +198,6 @@ def group_by_entity(raw):
                 except ValueError as err:
                     raise ValueError("Error in group by entity \n" + format_tb(err.__traceback__)[0] + err.args[0] + "\nEnd of error message.") from None
 
-                #print(sAll)
-
-            #return out;
-            #break;
-    # out["total"] = sum(out.values())
-    # return out
     return outputFile
 
 
@@ -232,27 +226,11 @@ def ner(text):
         ],
     }
     
-    #grouped = group_by_entity(raw)
     outputFile = group_by_entity(raw)
-
-    #figure = plot_to_figure(grouped)
-
     label = EXAMPLES.get(text, "Unknown")
-
-    #meta = {
-#        "entity_counts": grouped,
-#        "entities": len(set(grouped.keys())),
-#        "counts": sum(grouped.values()),
-#    }
-
-    #return (ner_content, meta, label, figure)
     outputDataframe = pd.read_csv(outputFile)
-    #outputFile = outputFile.replace(os.path.dirname(__file__) + "\\","")  # Just filename for File download UI output element 
-
-    #return (ner_content, meta, label, figure, outputDataframe, outputFile)
     return (ner_content, outputDataframe, outputFile)
 
-# New way = Gradio Blocks:
 demo = gr.Blocks()
 with demo:
     gr.Markdown(
@@ -261,9 +239,7 @@ with demo:
     """
     )
     input = gr.Textbox(label="Note text", value="")
-    #output=[
-    #    gr.HighlightedText(label="NER", combine_adjacent=True)
-    #]
+
     with gr.Tab("Biomedical Entity Recognition"):
         output=[
             gr.HighlightedText(label="NER", combine_adjacent=True),
@@ -276,10 +252,8 @@ with demo:
         examples=list(EXAMPLES.keys())  
         gr.Examples(examples, inputs=input)
         input.change(fn=ner, inputs=input, outputs=output)
+        
     with gr.Tab("Clinical Terminology Resolution"):
-        #output=[
-        #    gr.Textbox(placeholder="CT Match Results", lines=10)
-        #]
         with gr.Row(variant="compact"):
             btnLOINC = gr.Button("LOINC")
             btnPanels = gr.Button("Panels")
@@ -287,46 +261,8 @@ with demo:
             btnOMS = gr.Button("OMS")
             btnICD10 = gr.Button("ICD10")
 
-        #output=[
-        #    gr.HighlightedText(label="NER", combine_adjacent=True),
-        #    gr.File(label="File"),  # add download link here
-        #    gr.Dataframe(label="Dataframe", headers=["LOINC", "Panels", "SNOMED", "OMS", "ICD10"]),   # add harmonised output for input corpus here as a dataframe to UI
-        #    gr.Textbox(placeholder="CT Match Results", lines=10)    # add matched text scratchpad here
-        #]
-        
-
-        #textCT = gr.Textbox(placeholder="CT Match Results", lines=10)
-
-        #btnLOINC.click(loadFile, inputs=["LOINCTerms.txt"], outputs=output)
-        #btnPanels.click(loadFile, "LOINCPanelsandForms.txt", output)
-        #btnSNOMED.click(loadFile, "SNOMEDTerms.txt", output)
-        #btnOMS.click(loadFile, "OMSTerms.txt", output)
-        #btnICD10.click(loadFile, "ICD10Terms.txt", output)
-
         examples=list(EXAMPLES.keys())  
         gr.Examples(examples, inputs=input)
         input.change(fn=ner, inputs=input, outputs=output)
-    #with gr.Tab("Examples Page 1"):
-    #    gr.Examples(["a", "b", "c"], inputs=input)
-    #with gr.Tab("Examples Page 2"):
-    #    gr.Examples(["d", "e", "f"], inputs=input)
-    #with gr.Tab("Examples Page 2"):
-    #    gr.Examples(["g", "h", "i"], inputs=input)
-
+#layout="vertical"
 demo.launch(debug=True)
-
-# Old Way - Interface Load
-#interface = gr.Interface(
-#    ner,
-#    inputs=gr.Textbox(label="Note text", value=""),
-#    outputs=[
-#        gr.HighlightedText(label="NER", combine_adjacent=True),
-#        gr.JSON(label="Entity Counts"),
-#        gr.Label(label="Rating"),
-#        gr.Plot(label="Bar"),
-#    ],
-#    examples=list(EXAMPLES.keys()),
-#    allow_flagging="never",
-#)
-
-#interface.launch()