awacke1 commited on
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9801d9a
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1 Parent(s): b6cb77e

Update app.py

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  1. app.py +116 -95
app.py CHANGED
@@ -1,13 +1,16 @@
1
- import streamlit as st
2
- from transformers import pipeline
3
  import os
4
- import glob
5
  import re
6
- import pytz
 
 
 
 
7
  from datetime import datetime
8
- import base64
9
 
10
- # πŸŒ³πŸ€– AI Knowledge Tree Builder - Growing smarter with every click!
11
  st.set_page_config(
12
  page_title="AI Knowledge Tree Builder πŸ“ˆπŸŒΏ",
13
  page_icon="🌳✨",
@@ -16,7 +19,8 @@ st.set_page_config(
16
  )
17
 
18
  # Predefined Knowledge Trees
19
- BiologyAndLevel36MagicUsers = """
 
20
  0. Biology Core Rules and Future Exceptions
21
  1. Central Dogma DNA RNA Protein
22
  - Current CRISPR RNA editing πŸ§ͺ
@@ -26,42 +30,32 @@ BiologyAndLevel36MagicUsers = """
26
  - Current iPSCs organoids 🦠
27
  - Research Synthetic cells πŸ”¬
28
  - Future De novo cell creation πŸš€
29
- """
30
-
31
- AITopicsToInnovate1 = """
32
  1. Major AI Industry Players 🌐
33
  1. Research Leaders 🎯
34
  - OpenAI: GPT-4 DALL-E Foundation Models πŸ”΅
35
  - Google: PaLM Gemini LLMs 🟦
36
  - Anthropic: Claude Constitutional AI ⚑
37
- """
38
-
39
- MultiplayerGames = """
40
  0. Fantasy Domain Introduction
41
  1. Setting the Scene
42
  - Current Create a high-fantasy realm 🏞️
43
  - Research Add domain-specific entities πŸ§β€β™‚οΈ
44
  - Future AI-generated worldbuilding πŸš€
45
- """
46
-
47
- # Root Node with URLs
48
- RootNode = """
49
- 0. Research Hub 🌐
50
- 1. Awacke1 Profile
51
- - Link: [Hugging Face Profile](https://huggingface.co/awacke1) πŸ“š
52
- 2. TeachingCV App
53
- - Link: [TeachingCV](https://huggingface.co/spaces/awacke1/TeachingCV) πŸ–₯️
54
- 3. DeepResearchEvaluator App
55
- - Link: [DeepResearchEvaluator](https://huggingface.co/spaces/awacke1/DeepResearchEvaluator) πŸ”
56
- """
57
 
58
  # Utility Functions
59
  def sanitize_filename(text):
 
60
  safe_text = re.sub(r'[^\w\s-]', ' ', text)
61
  safe_text = re.sub(r'\s+', ' ', safe_text)
62
  return safe_text.strip()[:50]
63
 
64
  def generate_timestamp_filename(query):
 
65
  central = pytz.timezone('US/Central')
66
  current_time = datetime.now(central)
67
  time_str = current_time.strftime("%I%M%p")
@@ -70,9 +64,11 @@ def generate_timestamp_filename(query):
70
  return f"{time_str} {date_str} ({safe_query}).md"
71
 
72
  def parse_outline_to_mermaid(outline_text):
 
73
  lines = outline_text.strip().split('\n')
74
  nodes = []
75
  edges = []
 
76
  stack = []
77
  for line in lines:
78
  indent = len(line) - len(line.lstrip())
@@ -82,6 +78,7 @@ def parse_outline_to_mermaid(outline_text):
82
  if label:
83
  node_id = f"N{len(nodes)}"
84
  nodes.append(f'{node_id}["{label}"]')
 
85
  if stack:
86
  parent_level = stack[-1][0]
87
  if level > parent_level:
@@ -97,9 +94,38 @@ def parse_outline_to_mermaid(outline_text):
97
  stack.append((level, node_id))
98
  else:
99
  stack.append((level, node_id))
100
- return "graph TD\n" + "\n".join(nodes + edges)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
101
 
102
  def grow_tree(base_tree, new_node_name, parent_node):
 
103
  lines = base_tree.strip().split('\n')
104
  new_lines = []
105
  added = False
@@ -111,89 +137,76 @@ def grow_tree(base_tree, new_node_name, parent_node):
111
  added = True
112
  return "\n".join(new_lines)
113
 
114
- def breed_trees(tree1, tree2, intersect_node):
115
- lines1 = tree1.strip().split('\n')
116
- lines2 = tree2.strip().split('\n')
117
- new_lines = lines1.copy()
118
- for line in lines2:
119
- if intersect_node not in line and not any(line.strip() in l for l in lines1):
120
- new_lines.append(line)
121
- return "\n".join(new_lines)
122
-
123
- # Model Building Process
124
- def generate_model_pipeline():
125
- return """
126
- graph TD
127
- A[Load Data πŸ“Š] --> B[Preprocess Data πŸ› οΈ]
128
- B --> C[Train Model πŸ€–]
129
- C --> D[Evaluate Model πŸ“ˆ]
130
- D --> E[Deploy Model πŸš€]
131
- """
132
-
133
  # AI Lookup
134
  @st.cache_resource
135
  def load_generator():
 
136
  return pipeline("text-generation", model="distilgpt2")
137
 
138
- # Sidebar: File Management
139
- if 'selected_file' not in st.session_state:
140
- st.session_state.selected_file = None
141
-
142
- st.sidebar.title("πŸ“ Saved Interactions")
143
- md_files = glob.glob("*.md")
144
- for file in md_files:
145
- if st.sidebar.button(file):
146
- st.session_state.selected_file = file
147
- if st.sidebar.button("Create New Note"):
148
- filename = generate_timestamp_filename("New Note")
149
- with open(filename, 'w') as f:
150
- f.write("# New Note\n")
151
- st.sidebar.success(f"Created {filename}")
152
- st.session_state.selected_file = filename
 
 
 
 
 
 
 
 
153
 
154
- # Main App
155
  st.title("🌳 AI Knowledge Tree Builder 🌱")
156
- st.markdown("Grow and visualize knowledge trees, build ML pipelines, and explore research!")
157
-
158
- if st.session_state.selected_file:
159
- with open(st.session_state.selected_file, 'r') as f:
160
- content = f.read()
161
- st.markdown(content)
 
 
 
 
 
 
 
 
162
  else:
163
- # Knowledge Tree Selection and Growth
164
- trees = {
165
- "Research Hub": RootNode,
166
- "Biology": BiologyAndLevel36MagicUsers,
167
- "AI Topics": AITopicsToInnovate1,
168
- "Multiplayer Games": MultiplayerGames
169
- }
170
- selected_tree = st.selectbox("Select Knowledge Tree", list(trees.keys()))
171
- current_tree = trees[selected_tree]
 
172
 
173
  # Tree Growth
174
  new_node = st.text_input("Add New Node (e.g., 'ML Pipeline')")
175
- parent_node = st.text_input("Parent Node to Attach To (e.g., 'Research Leaders')")
176
  if st.button("Grow Tree 🌱") and new_node and parent_node:
177
- current_tree = grow_tree(current_tree, new_node, parent_node)
178
- trees[selected_tree] = current_tree
179
  st.success(f"Added '{new_node}' under '{parent_node}'!")
180
 
181
- # Tree Breeding
182
- breed_with = st.selectbox("Breed With Another Tree", [t for t in trees.keys() if t != selected_tree])
183
- intersect_node = st.text_input("Common Node for Breeding (e.g., 'Research')")
184
- if st.button("Breed Trees 🌳"):
185
- new_tree = breed_trees(current_tree, trees[breed_with], intersect_node)
186
- trees[f"{selected_tree} + {breed_with}"] = new_tree
187
- st.success(f"Created new tree: {selected_tree} + {breed_with}")
188
-
189
- # Display Tree
190
- mermaid_code = parse_outline_to_mermaid(current_tree)
191
  st.markdown("### Knowledge Tree Visualization")
192
- st.mermaid(mermaid_code)
193
-
194
- # Model Building Pipeline
195
- st.markdown("### ML Model Building Pipeline")
196
- st.mermaid(generate_model_pipeline())
197
 
198
  # AI Lookup
199
  query = st.text_input("Enter Query for AI Lookup")
@@ -206,5 +219,13 @@ else:
206
  f.write(f"# Query: {query}\n\n## AI Response\n{response}")
207
  st.success(f"Saved to {filename}")
208
 
 
 
 
 
 
 
 
 
209
  if __name__ == "__main__":
210
- st.sidebar.markdown("Explore, grow, and innovate!")
 
1
+ #!/usr/bin/env python3
2
+
3
  import os
 
4
  import re
5
+ import glob
6
+ import streamlit as st
7
+ import streamlit.components.v1 as components
8
+ from transformers import pipeline
9
+ from urllib.parse import quote
10
  from datetime import datetime
11
+ import pytz
12
 
13
+ # Page Configuration
14
  st.set_page_config(
15
  page_title="AI Knowledge Tree Builder πŸ“ˆπŸŒΏ",
16
  page_icon="🌳✨",
 
19
  )
20
 
21
  # Predefined Knowledge Trees
22
+ trees = {
23
+ "Biology": """
24
  0. Biology Core Rules and Future Exceptions
25
  1. Central Dogma DNA RNA Protein
26
  - Current CRISPR RNA editing πŸ§ͺ
 
30
  - Current iPSCs organoids 🦠
31
  - Research Synthetic cells πŸ”¬
32
  - Future De novo cell creation πŸš€
33
+ """,
34
+ "AI Topics": """
 
35
  1. Major AI Industry Players 🌐
36
  1. Research Leaders 🎯
37
  - OpenAI: GPT-4 DALL-E Foundation Models πŸ”΅
38
  - Google: PaLM Gemini LLMs 🟦
39
  - Anthropic: Claude Constitutional AI ⚑
40
+ """,
41
+ "Multiplayer Games": """
 
42
  0. Fantasy Domain Introduction
43
  1. Setting the Scene
44
  - Current Create a high-fantasy realm 🏞️
45
  - Research Add domain-specific entities πŸ§β€β™‚οΈ
46
  - Future AI-generated worldbuilding πŸš€
47
+ """
48
+ }
 
 
 
 
 
 
 
 
 
 
49
 
50
  # Utility Functions
51
  def sanitize_filename(text):
52
+ """Sanitize text for use in filenames."""
53
  safe_text = re.sub(r'[^\w\s-]', ' ', text)
54
  safe_text = re.sub(r'\s+', ' ', safe_text)
55
  return safe_text.strip()[:50]
56
 
57
  def generate_timestamp_filename(query):
58
+ """Generate a timestamped filename for saving files."""
59
  central = pytz.timezone('US/Central')
60
  current_time = datetime.now(central)
61
  time_str = current_time.strftime("%I%M%p")
 
64
  return f"{time_str} {date_str} ({safe_query}).md"
65
 
66
  def parse_outline_to_mermaid(outline_text):
67
+ """Convert a tree outline to Mermaid syntax with clickable nodes."""
68
  lines = outline_text.strip().split('\n')
69
  nodes = []
70
  edges = []
71
+ clicks = []
72
  stack = []
73
  for line in lines:
74
  indent = len(line) - len(line.lstrip())
 
78
  if label:
79
  node_id = f"N{len(nodes)}"
80
  nodes.append(f'{node_id}["{label}"]')
81
+ clicks.append(f'click {node_id} "?q={quote(label)}" _blank')
82
  if stack:
83
  parent_level = stack[-1][0]
84
  if level > parent_level:
 
94
  stack.append((level, node_id))
95
  else:
96
  stack.append((level, node_id))
97
+ return "graph TD\n" + "\n".join(nodes + edges + clicks)
98
+
99
+ def generate_mermaid_html(mermaid_code: str) -> str:
100
+ """Generate HTML to center and display a Mermaid diagram."""
101
+ return f"""
102
+ <html>
103
+ <head>
104
+ <script src="https://cdn.jsdelivr.net/npm/mermaid/dist/mermaid.min.js"></script>
105
+ <style>
106
+ .centered-mermaid {{
107
+ display: flex;
108
+ justify-content: center;
109
+ margin: 20px auto;
110
+ }}
111
+ .mermaid {{
112
+ max-width: 800px;
113
+ }}
114
+ </style>
115
+ </head>
116
+ <body>
117
+ <div class="mermaid centered-mermaid">
118
+ {mermaid_code}
119
+ </div>
120
+ <script>
121
+ mermaid.initialize({{ startOnLoad: true }});
122
+ </script>
123
+ </body>
124
+ </html>
125
+ """
126
 
127
  def grow_tree(base_tree, new_node_name, parent_node):
128
+ """Add a new node to the tree under a specified parent."""
129
  lines = base_tree.strip().split('\n')
130
  new_lines = []
131
  added = False
 
137
  added = True
138
  return "\n".join(new_lines)
139
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
140
  # AI Lookup
141
  @st.cache_resource
142
  def load_generator():
143
+ """Load a text generation model for AI lookups."""
144
  return pipeline("text-generation", model="distilgpt2")
145
 
146
+ # File Management
147
+ def FileSidebar():
148
+ """Render a sidebar for managing Markdown files."""
149
+ st.sidebar.title("πŸ“ Saved Interactions")
150
+ md_files = glob.glob("*.md")
151
+ for file in md_files:
152
+ col1, col2, col3 = st.sidebar.columns([1, 3, 1])
153
+ with col1:
154
+ if st.button("πŸ“‚", key=f"open_{file}"):
155
+ with open(file, 'r') as f:
156
+ st.session_state['file_content'] = f.read()
157
+ st.session_state['selected_file'] = file
158
+ with col2:
159
+ st.write(file)
160
+ with col3:
161
+ if st.button("πŸ—‘", key=f"delete_{file}"):
162
+ os.remove(file)
163
+ st.rerun()
164
+ if st.sidebar.button("Create New Note"):
165
+ filename = generate_timestamp_filename("New Note")
166
+ with open(filename, 'w') as f:
167
+ f.write("# New Note\n")
168
+ st.sidebar.success(f"Created {filename}")
169
 
170
+ # Main App Logic
171
  st.title("🌳 AI Knowledge Tree Builder 🌱")
172
+ st.markdown("Grow, visualize, and explore knowledge trees with AI!")
173
+
174
+ # Handle Query Parameters
175
+ query_params = st.query_params
176
+ if 'q' in query_params:
177
+ query = query_params['q']
178
+ st.subheader(f"AI Lookup for: {query}")
179
+ generator = load_generator()
180
+ response = generator(query, max_length=50)[0]['generated_text']
181
+ st.write(f"**Response:** {response}")
182
+ filename = generate_timestamp_filename(query)
183
+ with open(filename, 'w') as f:
184
+ f.write(f"# Query: {query}\n\n## AI Response\n{response}")
185
+ st.success(f"Saved to {filename}")
186
  else:
187
+ # Tree Selection and Interaction
188
+ if 'current_tree' not in st.session_state:
189
+ st.session_state['current_tree'] = trees["Biology"]
190
+ if 'selected_tree_name' not in st.session_state:
191
+ st.session_state['selected_tree_name'] = "Biology"
192
+
193
+ selected_tree = st.selectbox("Select Knowledge Tree", list(trees.keys()), key="tree_select")
194
+ if selected_tree != st.session_state['selected_tree_name']:
195
+ st.session_state['current_tree'] = trees[selected_tree]
196
+ st.session_state['selected_tree_name'] = selected_tree
197
 
198
  # Tree Growth
199
  new_node = st.text_input("Add New Node (e.g., 'ML Pipeline')")
200
+ parent_node = st.text_input("Parent Node to Attach To (e.g., 'Central Dogma')")
201
  if st.button("Grow Tree 🌱") and new_node and parent_node:
202
+ st.session_state['current_tree'] = grow_tree(st.session_state['current_tree'], new_node, parent_node)
 
203
  st.success(f"Added '{new_node}' under '{parent_node}'!")
204
 
205
+ # Display Mermaid Diagram
 
 
 
 
 
 
 
 
 
206
  st.markdown("### Knowledge Tree Visualization")
207
+ mermaid_code = parse_outline_to_mermaid(st.session_state['current_tree'])
208
+ mermaid_html = generate_mermaid_html(mermaid_code)
209
+ components.html(mermaid_html, height=600)
 
 
210
 
211
  # AI Lookup
212
  query = st.text_input("Enter Query for AI Lookup")
 
219
  f.write(f"# Query: {query}\n\n## AI Response\n{response}")
220
  st.success(f"Saved to {filename}")
221
 
222
+ # File Viewer
223
+ if 'file_content' in st.session_state:
224
+ st.markdown("### Selected File")
225
+ st.markdown(st.session_state['file_content'])
226
+
227
+ # Sidebar
228
+ FileSidebar()
229
+
230
  if __name__ == "__main__":
231
+ st.sidebar.markdown("Explore and grow your knowledge trees!")