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Browse files- app.R +45 -31
- schema.yml +4 -4
- system-prompt.md +3 -1
app.R
CHANGED
@@ -35,7 +35,7 @@ ui <- page_sidebar(
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layout_columns(
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textInput("chat",
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label = NULL,
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"Which counties in California have the highest average social vulnerability?",
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width = "100%"),
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div(
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actionButton("user_msg", "", icon = icon("paper-plane"),
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@@ -44,7 +44,7 @@ ui <- page_sidebar(
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col_widths = c(11, 1)),
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fill = FALSE
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),
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-
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textOutput("agent"),
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@@ -55,14 +55,14 @@ ui <- page_sidebar(
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plotOutput("chart2"),
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),
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col_widths = c(8, 4),
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row_heights = c("
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max_height = "
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),
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gt_output("table"),
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card(fill = TRUE,
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card_header(fa("robot")),
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accordion(
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open = FALSE,
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accordion_panel(
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@@ -76,13 +76,21 @@ ui <- page_sidebar(
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textOutput("explanation"),
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)
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),
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-
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card_header("Errata"),
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shiny::markdown(readr::read_file("footer.md")),
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)
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),
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-
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sidebar = sidebar(
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input_switch("redlines", "Redlined Areas", value = FALSE),
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input_switch("svi", "Social Vulnerability", value = TRUE),
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input_switch("richness", "Biodiversity Richness", value = FALSE),
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@@ -99,21 +107,15 @@ ui <- page_sidebar(
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repo <- "https://data.source.coop/cboettig/social-vulnerability"
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pmtiles <- glue("{repo}/
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parquet <- glue("{repo}/
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con <- duckdbfs::cached_connection()
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svi <- open_dataset(parquet, tblname = "svi") |> filter(RPL_THEMES > 0)
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base_url = "https://llm.nrp-nautilus.io/",
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model = "llama3",
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api_key = Sys.getenv("NRP_API_KEY"),
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system_prompt = system_prompt,
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api_args = list(temperature = 0)
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)
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# helper utilities
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# faster/more scalable to pass maplibre the ids to refilter pmtiles,
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@@ -140,17 +142,30 @@ server <- function(input, output, session) {
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chart1 <- chart1_data |>
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ggplot(aes(mean_svi)) + geom_density(fill="darkred") +
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ggtitle("County-level vulnerability nation-wide")
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-
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data <- reactiveValues(df = tibble())
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output$chart1 <- renderPlot(chart1)
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observeEvent(input$user_msg, {
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stream <- chat$chat(input$chat)
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# Parse response
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response <- jsonlite::fromJSON(stream)
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if ("query" %in% names(response)) {
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output$sql_code <- renderText(stringr::str_wrap(response$query, width = 60))
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@@ -187,12 +202,12 @@ server <- function(input, output, session) {
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}
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})
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output$map <- renderMaplibre({
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m <- maplibre(center = c(-
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if (input$redlines) {
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m <- m |>
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add_fill_layer(
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@@ -230,7 +245,7 @@ server <- function(input, output, session) {
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id = "svi_layer",
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source = list(type = "vector",
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url = paste0("pmtiles://", pmtiles)),
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source_layer = "
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filter = filter_column(svi, data$df, "FIPS"),
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fill_opacity = 0.5,
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fill_color = interpolate(column = "RPL_THEMES",
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@@ -239,9 +254,8 @@ server <- function(input, output, session) {
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na_color = "lightgrey")
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)
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}
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m
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-
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-
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}
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layout_columns(
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textInput("chat",
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label = NULL,
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"Which four counties in California have the highest average social vulnerability?",
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width = "100%"),
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div(
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actionButton("user_msg", "", icon = icon("paper-plane"),
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col_widths = c(11, 1)),
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fill = FALSE
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),
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+
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textOutput("agent"),
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plotOutput("chart2"),
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),
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col_widths = c(8, 4),
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row_heights = c("500px"),
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max_height = "600px"
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),
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gt_output("table"),
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card(fill = TRUE,
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card_header(fa("robot"), textOutput("model", inline = TRUE)),
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accordion(
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open = FALSE,
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accordion_panel(
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textOutput("explanation"),
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)
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),
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),
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card(
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card_header("Errata"),
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shiny::markdown(readr::read_file("footer.md")),
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),
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sidebar = sidebar(
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selectInput(
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"select",
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"Select an LLM:",
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list("LLama3" = "llama3",
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#"OLMO2 (AllenAI)" = "olmo",
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"Gorilla (UC Berkeley)" = "gorilla"
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)
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),
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input_switch("redlines", "Redlined Areas", value = FALSE),
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input_switch("svi", "Social Vulnerability", value = TRUE),
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input_switch("richness", "Biodiversity Richness", value = FALSE),
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repo <- "https://data.source.coop/cboettig/social-vulnerability"
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pmtiles <- glue("{repo}/2022/SVI2022_US_tract.pmtiles")
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parquet <- glue("{repo}/2022/SVI2022_US_tract.parquet")
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con <- duckdbfs::cached_connection()
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svi <- open_dataset(parquet, tblname = "svi") |> filter(RPL_THEMES > 0)
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safe_parse <- function(txt) {
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gsub("[\r\n]", " ", txt) |> gsub("\\s+", " ", x = _)
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}
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# helper utilities
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# faster/more scalable to pass maplibre the ids to refilter pmtiles,
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chart1 <- chart1_data |>
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ggplot(aes(mean_svi)) + geom_density(fill="darkred") +
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ggtitle("County-level vulnerability nation-wide")
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+
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data <- reactiveValues(df = tibble())
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output$chart1 <- renderPlot(chart1)
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model <- reactive(input$select)
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output$model <- renderText(input$select)
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observe({
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schema <- read_file("schema.yml")
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system_prompt <- glue::glue(readr::read_file("system-prompt.md"),
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.open = "<", .close = ">")
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chat <- ellmer::chat_vllm(
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base_url = "https://llm.nrp-nautilus.io/",
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model = model(),
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api_key = Sys.getenv("NRP_API_KEY"),
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system_prompt = system_prompt,
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api_args = list(temperature = 0)
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)
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observeEvent(input$user_msg, {
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stream <- chat$chat(input$chat)
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# Parse response
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response <- jsonlite::fromJSON(safe_parse(stream))
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#response <- jsonlite::fromJSON(stream)
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if ("query" %in% names(response)) {
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output$sql_code <- renderText(stringr::str_wrap(response$query, width = 60))
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}
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})
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})
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output$map <- renderMaplibre({
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m <- maplibre(center = c(-104.9, 40.3), zoom = 3, height = "400")
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if (input$redlines) {
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m <- m |>
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add_fill_layer(
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id = "svi_layer",
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source = list(type = "vector",
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url = paste0("pmtiles://", pmtiles)),
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source_layer = "svi",
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filter = filter_column(svi, data$df, "FIPS"),
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fill_opacity = 0.5,
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fill_color = interpolate(column = "RPL_THEMES",
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na_color = "lightgrey")
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)
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}
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m
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})
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}
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schema.yml
CHANGED
@@ -1,15 +1,15 @@
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- VARIABLE_NAME: ST
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DESCRIPTION: State-level FIPS code (two-digit integer)
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- VARIABLE_NAME: STATE
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DESCRIPTION: State name
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- VARIABLE_NAME: ST_ABBR
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DESCRIPTION: State abbreviation
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- VARIABLE_NAME: STCNTY
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DESCRIPTION: County-level FIPS code (5 digit integer)
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- VARIABLE_NAME: COUNTY
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DESCRIPTION: County name
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- VARIABLE_NAME: FIPS
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DESCRIPTION: Tract-level geographic identification (full Census Bureau FIPS code)
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- VARIABLE_NAME: LOCATION
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DESCRIPTION: Text description of tract county state
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- VARIABLE_NAME: AREA_SQMI
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- VARIABLE_NAME: ST
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DESCRIPTION: INTEGER State-level FIPS code (two-digit integer)
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- VARIABLE_NAME: STATE
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DESCRIPTION: State name
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- VARIABLE_NAME: ST_ABBR
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DESCRIPTION: State abbreviation, two-letter string
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- VARIABLE_NAME: STCNTY
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DESCRIPTION: INTEGER County-level FIPS code (5 digit integer)
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- VARIABLE_NAME: COUNTY
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DESCRIPTION: County name
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- VARIABLE_NAME: FIPS
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DESCRIPTION: INTEGER, Tract-level geographic identification (full Census Bureau FIPS code)
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- VARIABLE_NAME: LOCATION
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DESCRIPTION: Text description of tract county state
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- VARIABLE_NAME: AREA_SQMI
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system-prompt.md
CHANGED
@@ -8,10 +8,12 @@ Include semantically meaningful columns like COUNTY and STATE name.
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If your answer involves the construction of a SQL query, you must format your answer as follows:
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{
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"query": "your raw SQL response goes here",
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"explanation": "your explanation of the query"
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}
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If your answer does not involve a SQL query, please reply with the following format instead:
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{
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If your answer involves the construction of a SQL query, you must format your answer as follows:
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{
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"query": "your raw SQL response goes here.",
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"explanation": "your explanation of the query"
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}
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Think carefully about your SQL query, keep it concise and ensure it is entirely valid SQL syntax.
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+
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If your answer does not involve a SQL query, please reply with the following format instead:
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{
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