Spaces:
Sleeping
Sleeping
add drop down menus for data layers
Browse files
app.py
CHANGED
@@ -28,7 +28,7 @@ pad_pmtiles = "https://huggingface.co/datasets/boettiger-lab/pad-us-3/resolve/ma
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parquet = "https://huggingface.co/datasets/boettiger-lab/pad-us-3/resolve/main/pad-stats.parquet"
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#
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private_color = "#DE881E" # orange #"#850101" # red
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tribal_color = "#BF40BF" # purple
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mixed_color = "#005a00" # green
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@@ -42,6 +42,8 @@ style_choice = "Manager Type"
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us_lower_48_area_m2 = 7.8e+12
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@st.cache_resource
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def ibis_connection(parquet):
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return ibis.read_parquet(parquet)
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@@ -92,7 +94,24 @@ def area_plot(df, column):
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plot = pie # pie + text
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return plot.properties(width=180, height=180)
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@@ -122,6 +141,8 @@ mutate(percent_protected = _.percent_protected.round())
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)
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'''
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manager = {
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'property': 'manager_type',
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'type': 'categorical',
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@@ -186,136 +207,142 @@ iucn = {
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]
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}
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["get", "richness"],
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0, "#FFE6EE",
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4.8, "#850101"
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]
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rsr = ["interpolate",
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["linear"],
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["get", "rsr"],
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0, "#FFE6EE",
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0.006, "#850101"
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]
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"version": 8,
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"sources": {
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"
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"type": "vector",
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"url": "pmtiles://" +
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"attribution": "
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"layers": [{
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"id": "
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"source": "
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"source-layer": "
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"type": "fill",
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"paint": {
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code_ex='''
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m.add_cog_layer("https://data.source.coop/vizzuality/lg-land-carbon-data/natcrop_expansion_100m_cog.tif",
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palette="oranges", name="Cropland Expansion", transparent_bg=True, opacity = 0.7, zoom_to_layer=False)
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'''
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# +
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## Map controls sidebar
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with st.sidebar:
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"
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alpha = st.slider("transparency", 0.0, 1.0, 0.5)
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with st.expander("custom style"):
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custom = st.text_area(
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label = "Define a custom mapbox fill-color rule",
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value = custom_style,
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height = 100)
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style_options = {
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"GAP Status Code": gap,
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"IUCN Status Code": iucn,
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"Manager Type": manager,
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"Fee/Easement": easement,
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"Public Access": access,
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"Mean Richness": richness,
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"Mean RSR": rsr,
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"custom": eval(custom)}
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style_choice = st.radio("Color protected Areas by", style_options)
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style = pad_style(style_options[style_choice], alpha)
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m.add_pmtiles(pad_pmtiles, name="Protected Areas (PAD-US-3)", style=style, overlay=True, show=True, zoom_to_layer=False)
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## Add legend based on selected style?
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# m.add_legend(legend_dict=legend_dict)
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if st.toggle("Manageable Carbon"):
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m.add_cog_layer("https://data.source.coop/cboettig/carbon/cogs/manageable_c_total_2018.tif",
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palette="greens", name="Manageable Carbon", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
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if st.toggle("Human Impact"):
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hi="https://data.source.coop/vizzuality/hfp-100/hfp_2021_100m_v1-2_cog.tif"
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m.add_cog_layer(hi, palette="purples", name="Human Impact", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
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m.add_cog_layer("https://data.source.coop/vizzuality/lg-land-carbon-data/natcrop_bii_100m_cog.tif",
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palette="reds", name="biodiversity intactness loss", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
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if st.toggle("Forest Integrity Loss"):
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m.add_cog_layer("https://data.source.coop/vizzuality/lg-land-carbon-data/natcrop_fii_100m_cog.tif",
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palette="reds", name="forest integrity loss", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
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# "## Boundaries"
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# boundaries = st.radio("Boundaries:",
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# "custom"]
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# )
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# Fire Polygons, USGS
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if st.toggle("Fire boundaries"):
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usgs = "https://data.source.coop/cboettig/fire/usgs-mtbs.pmtiles"
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combined_style = {
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"version": 8,
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"sources": {
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"source1": {
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"type": "vector",
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"url": "pmtiles://" + usgs,
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"attribution": "USGS"}},
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"layers": [{
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"id": "usgs",
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"source": "source1",
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"source-layer": "mtbs_perims_DD",
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"type": "fill",
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"paint": {"fill-color": "#FFA500", "fill-opacity": 0.4}}]}
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m.add_pmtiles(usgs, name="Fire", style=combined_style, overlay=True, show=True, zoom_to_layer=False)
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# Map radio buttons to corresponding column:
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select_column = {
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"GAP Status Code": "gap_code",
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@@ -462,11 +475,13 @@ with footer:
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### Data sources
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- US Protected Areas Database v3 by USGS
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- Human Footprint by Vizzuality, on https://beta.source.coop/repositories/vizzuality/hfp-100. Citation: https://doi.org/10.3389/frsen.2023.1130896, License: Public Domain
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- Fire polygons by USGS, reprocessed to PMTiles on https://beta.source.coop/cboettig/fire/. License: Public Domain
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- Irrecoverable Carbon from Conservation International, reprocessed to COG on https://beta.source.coop/cboettig/carbon, citation: https://doi.org/10.1038/s41893-021-00803-6, License: CC-BY-NC
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### Software
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parquet = "https://huggingface.co/datasets/boettiger-lab/pad-us-3/resolve/main/pad-stats.parquet"
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# some default color variables, consider user palette via st.color_picker()
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private_color = "#DE881E" # orange #"#850101" # red
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tribal_color = "#BF40BF" # purple
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mixed_color = "#005a00" # green
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us_lower_48_area_m2 = 7.8e+12
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## Helper functions
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@st.cache_resource
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def ibis_connection(parquet):
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return ibis.read_parquet(parquet)
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plot = pie # pie + text
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return plot.properties(width=180, height=180)
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def pad_style(paint, alpha):
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return {
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"version": 8,
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"sources": {
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"pad": {
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"type": "vector",
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"url": "pmtiles://" + pad_pmtiles,
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"attribution": "US PAD v3"}},
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"layers": [{
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"id": "public",
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"source": "pad",
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"source-layer": "pad-stats",
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"type": "fill",
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"paint": {
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"fill-color": paint,
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"fill-opacity": alpha
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}
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}]}
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)
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'''
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## Protected Area polygon color codes
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manager = {
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'property': 'manager_type',
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'type': 'categorical',
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]
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}
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style_options = {
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"GAP Status Code": gap,
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"IUCN Status Code": iucn,
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"Manager Type": manager,
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"Fee/Easement": easement,
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"Public Access": access,
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# "Mean Richness": richness,
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# "Mean RSR": rsr,
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# "custom": eval(custom)
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}
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code_ex='''
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m.add_cog_layer("https://data.source.coop/vizzuality/lg-land-carbon-data/natcrop_expansion_100m_cog.tif",
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palette="oranges", name="Cropland Expansion", transparent_bg=True, opacity = 0.7, zoom_to_layer=False)
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'''
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justice40 = "https://data.source.coop/cboettig/justice40/disadvantaged-communities.pmtiles"
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justice40_fill = {
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'property': 'Disadvan',
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'type': 'categorical',
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'stops': [
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[0, "rgba(255, 255, 255, 0)"],
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[1, "rgba(0, 0, 139, 1)"]]}
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justice40_style = {
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"version": 8,
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"sources": {
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"source1": {
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"type": "vector",
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"url": "pmtiles://" + justice40,
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"attribution": "Justice40"}
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},
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"layers": [{
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"id": "layer1",
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"source": "source1",
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"source-layer": "DisadvantagedCommunitiesCEJST",
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"type": "fill",
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"paint": {"fill-color": justice40_fill, "fill-opacity": 0.6}}]
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}
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# +
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## Map controls sidebar
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with st.sidebar:
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if st.toggle("Protected Areas", True):
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style_choice = st.radio("Color by:", style_options)
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alpha = st.slider("transparency", 0.0, 1.0, 0.5)
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style = pad_style(style_options[style_choice], alpha)
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m.add_pmtiles(pad_pmtiles, name="Protected Areas (PAD-US-3)", style=style, overlay=True, show=True, zoom_to_layer=False)
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## Add legend based on selected style?
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# m.add_legend(legend_dict=legend_dict)
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with st.expander("π¦ Biodiversity"):
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if st.toggle("Species Richness", False):
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m.add_tile_layer(url="https://data.source.coop/cboettig/mobi/tiles/red/species-richness-all/{z}/{x}/{y}.png",
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name="MOBI Species Richness",
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attribution="NatureServe",
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opacity=0.9
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)
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if st.toggle("Range-Size Rarity"):
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m.add_tile_layer(url="https://data.source.coop/cboettig/mobi/tiles/green/range-size-rarity-all/{z}/{x}/{y}.png",
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name="MOBI Range-Size Rarity",
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attribution="NatureServe",
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opacity=0.9
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)
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#m.add_cog_layer("https://data.source.coop/cboettig/mobi/range-size-rarity-all/RSR_All.tif",
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# palette="greens", name="Range-Size Rarity", transparent_bg=True, opacity = 0.9, zoom_to_layer=False)
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with st.expander("β
Carbon & Climate"):
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if st.toggle("Carbon Lost (2002-2022)"):
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m.add_cog_layer("https://data.source.coop/vizzuality/lg-land-carbon-data/deforest_carbon_100m_cog.tif",
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palette="reds", name="Carbon Lost (2002-2022)", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
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if st.toggle("Irrecoverable Carbon"):
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m.add_cog_layer("https://data.source.coop/cboettig/carbon/cogs/irrecoverable_c_total_2018.tif",
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palette="purples", name="Irrecoverable Carbon", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
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if st.toggle("Manageable Carbon"):
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m.add_cog_layer("https://data.source.coop/cboettig/carbon/cogs/manageable_c_total_2018.tif",
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palette="greens", name="Manageable Carbon", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
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with st.expander("π Human Impacts"):
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if st.toggle("Human Impact"):
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hi="https://data.source.coop/vizzuality/hfp-100/hfp_2021_100m_v1-2_cog.tif"
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m.add_cog_layer(hi, palette="purples", name="Human Impact", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
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if st.toggle("cropland expansion"):
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m.add_cog_layer("https://data.source.coop/vizzuality/lg-land-carbon-data/natcrop_expansion_100m_cog.tif",
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palette="greens", name="cropland expansion", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
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if st.toggle("Biodiversity Intactness Loss"):
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m.add_cog_layer("https://data.source.coop/vizzuality/lg-land-carbon-data/natcrop_bii_100m_cog.tif",
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palette="reds", name="biodiversity intactness loss", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
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if st.toggle("Forest Integrity Loss"):
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m.add_cog_layer("https://data.source.coop/vizzuality/lg-land-carbon-data/natcrop_fii_100m_cog.tif",
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palette="reds", name="forest integrity loss", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
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with st.expander("β Equity and Justice"):
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if st.toggle("Climate & Economic Justice"):
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m.add_pmtiles(justice40, name="Climate & Economic Justice", style = justice40_style, overlay=True, show=True, zoom_to_layer=False)
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with st.expander("π₯ Wildfire"):
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# Fire Polygons, USGS
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if st.toggle("Fire boundaries"):
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usgs = "https://data.source.coop/cboettig/fire/usgs-mtbs.pmtiles"
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fire_style = {
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"version": 8,
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"sources": {
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"source1": {
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"type": "vector",
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"url": "pmtiles://" + usgs,
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"attribution": "USGS"}},
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"layers": [{
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331 |
+
"id": "usgs",
|
332 |
+
"source": "source1",
|
333 |
+
"source-layer": "mtbs_perims_DD",
|
334 |
+
"type": "fill",
|
335 |
+
"paint": {"fill-color": "#FFA500", "fill-opacity": 0.4}}]}
|
336 |
+
m.add_pmtiles(usgs, name="Fire", style=fire_style, overlay=True, show=True, zoom_to_layer=False)
|
337 |
+
|
338 |
+
|
339 |
+
with st.expander("π» Custom code"):
|
340 |
+
if st.toggle("Custom map layers"):
|
341 |
+
|
342 |
+
code = st.text_area(label = "leafmap code:",
|
343 |
+
value = code_ex,
|
344 |
+
height = 100)
|
345 |
+
eval(compile(code, "<string>", "exec"))
|
346 |
|
347 |
# "## Boundaries"
|
348 |
# boundaries = st.radio("Boundaries:",
|
|
|
353 |
# "custom"]
|
354 |
# )
|
355 |
|
356 |
+
with st.expander("πΊ Basemaps"):
|
357 |
+
# radio selector would make more sense
|
358 |
+
if st.toggle("Topography"):
|
359 |
+
m.add_basemap("Esri.WorldShadedRelief")
|
360 |
+
if st.toggle("Satellite"):
|
361 |
+
m.add_basemap("Esri.WorldImagery")
|
362 |
+
|
363 |
|
364 |
+
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
365 |
# Map radio buttons to corresponding column:
|
366 |
select_column = {
|
367 |
"GAP Status Code": "gap_code",
|
|
|
475 |
|
476 |
### Data sources
|
477 |
|
478 |
+
- US Protected Areas Database v3 by USGS. Data: https://beta.source.coop/cboettig/us-pad-3. Citation: https://doi.org/10.5066/P9Q9LQ4B, License: Public Domain
|
479 |
+
- Imperiled Species Richness and Range-Size-Rarity from NatureServe (2022). Data: https://beta.source.coop/repositories/cboettig/mobi. License CC-BY-NC-ND
|
480 |
+
- Carbon-loss and farming impact by Vizzuality, on https://beta.source.coop/repositories/vizzuality/lg-land-carbon-data. Citation: https://doi.org/10.1101/2023.11.01.565036, License: CC-BY
|
481 |
- Human Footprint by Vizzuality, on https://beta.source.coop/repositories/vizzuality/hfp-100. Citation: https://doi.org/10.3389/frsen.2023.1130896, License: Public Domain
|
482 |
+
- Fire polygons by USGS, reprocessed to PMTiles on https://beta.source.coop/cboettig/fire/. License: Public Domain
|
483 |
- Irrecoverable Carbon from Conservation International, reprocessed to COG on https://beta.source.coop/cboettig/carbon, citation: https://doi.org/10.1038/s41893-021-00803-6, License: CC-BY-NC
|
484 |
+
- Climate and Economic Justice Screening Tool, US Council on Environmental Quality, Justice40, data: https://beta.source.coop/repositories/cboettig/justice40/description/, License: Public Domain
|
485 |
|
486 |
### Software
|
487 |
|