WIP

app.py

@@ -27,9 +27,9 @@ public_color = "#3388ff" # blue
 
 low = 2
 high = 3
+alpha = .5
 
 # +
-
 st.set_page_config(layout="wide", page_title="Protected Areas Explorer", page_icon=":globe:")
 
 '''
@@ -51,205 +51,257 @@ Alternative color rules can be applied, for instance, to distinguish between eas
 charts summarize the total protected area and mean richness and mean RSR within each group.  
 
 '''
+# -
 
-# +
-## Map controls sidebar
-
-sample_style = '''{
-"fill-color": "blue",
- "fill-opacity": 0.5
-}
-'''
-
-with st.sidebar:
-
-    "## Map controls"
-    
-    style_choice = st.radio(
-    "Color areas by",
-    ["management type",
-     "Fee/Easement",
-     "species richness (thresholds)",  
-     "species richness (continuous)",
-     "custom"]
-    )
-
-    "### Management Types Color selector"
-
-    public_color = st.color_picker('Color for Public Protected (Gap 1 & 2) lands', public_color)
-    mixed_color = st.color_picker('Color for Public Mixed Use lands', mixed_color)
-    tribal_color = st.color_picker('Color for Tribal managed lands', tribal_color)
-    private_color = st.color_picker('Color for privately managed land', private_color)
-    
-    "### Threshold selector"
-    
-    low = st.slider("Red when richness is less than", 0, 30, low)
-    high = st.slider("Green for richness larger than", 0, 30, high)
-    "missing data in grey. in-between values in blue"
-
-
-    "### Custom styles"
-    custom = st.text_area(
-        label = "Define a custom mapbox fill-color rule",
-        value = sample_style, 
-        height = 100)
-
-
+pad_pmtiles = "https://data.source.coop/cboettig/pad-us-3/pad-mobi.pmtiles"
 
 # +
+#parquet = "https://data.source.coop/cboettig/pad-us-3/pad-mobi.parquet"
+parquet = "https://minio.carlboettiger.info/public-biodiversity/pad-us-3/pad-mobi.parquet"
 
-bucket = {
-    "fill-color": 
-                      ['case',
-                      ['==', ['get', 'bucket'], 'public'],
-                       public_color,
-                      ['==', ['get', 'bucket'], 'private'],
-                       private_color,
-                      ['==', ['get', 'bucket'], 'tribal'],
-                       tribal_color,
-                       mixed_color # default (bucket == mixed)
-                       ],
-     "fill-opacity": 0.5
-    }
-
+@st.cache_resource
+def ibis_connection(parquet):
+    return ibis.read_parquet(parquet)
 
-easement = {
-    "fill-color": 
-                      ['case',
-                      ['==', ['get', 'FeatClass'], 'Fee'],
-                       public_color,
-                      ['==', ['get', 'FeatClass'], 'Easement'],
-                       private_color,
-                      ['==', ['get', 'FeatClass'], 'Proclamation'],
-                       tribal_color,
-                       mixed_color # default (bucket == mixed)
-                       ],
-     "fill-opacity": 0.5
-    }
-
-
-thresholds = {
-    "fill-color": 
-                      ['case',
-                      ['<', ['get', 'richness'], low],
-                       private_color,
-                      ['>=', ['get', 'richness'], high],
-                       mixed_color,
-                       public_color # default
-                       ],
-     "fill-opacity": 0.5
-    }
-
-
-richness = {
-    "fill-color": [
-                  "interpolate",
-                  ["linear"],
-                  ["get", "richness"],
-                  0,
-                  # ["min", ["number", ["get", "richness"]]],
-                  "rgb(252, 226, 220)",
-                  #["max", ["get", "richness"]],
-                  6,
-                  "rgb(102, 16, 66)"
-                ],
-    "fill-opacity": 0.9
-}
-
-rsr = {
-    "fill-color": [
-                  "interpolate",
-                  ["linear"],
-                  ["get", "rsr"],
-                  0,
-                  # ["min", ["number", ["get", "richness"]]],
-                  "rgb(252, 226, 220)",
-                  #["max", ["get", "richness"]],
-                  6,
-                  "rgb(102, 16, 66)"
-                ],
-    "fill-opacity": 0.9
-}
+pad_data = ibis_connection(parquet)
 
 
 # +
-if style_choice == "management type":
-    paint_fill = bucket
-if style_choice == "Fee/Easement":
-    paint_fill = easement
-if style_choice == "species richness (thresholds)":
-    paint_fill = thresholds
-if style_choice == "species richness (continuous)":
-    paint_fill = richness
-if style_choice == "custom":
-    paint_fill = eval(custom)
-
-
-r = {
-    "fill-color": [
-        "rgb",
-        # red is higher when richness is higher
-        ["get", "richness"],
-        # green is always zero
-        0,
-        # blue is higher when richness is lower
-        ["-", 100, ["get", "richness"]]],
-    "fill-opacity": 0.8
-}
+@st.cache_data
+def pad_stats(_pad_data):
+    return (_pad_data
+             .aggregate(min_richness = _.richness.min(),
+                        max_richness = _.richness.max(),
+                        mean_richness = _.richness.mean(),
+                        sd_richness = _.richness.std(),
+                        min_rsr = _.rsr.min(),
+                        max_rsr = _.rsr.max(),
+                        mean_rsr = _.rsr.mean(),
+                        sd_rsr = _.rsr.std())
+             .to_pandas()
+            )
+    
+stats = pad_stats(pad_data)
+upper_rsr = stats["mean_rsr"][0] + stats["sd_rsr"][0]
+upper_richness = stats["mean_richness"][0] + stats["sd_richness"][0]
+# -
 
+m = leafmap.Map(center=[35, -100], zoom=4, layers_control=True, fullscreen_control=True)
 
+metadata = leafmap.pmtiles_metadata(pad_pmtiles)
+#print(f"layer names: {metadata['layer_names']}")
 
 # +
-import leafmap.foliumap as leafmap
+custom_style = '''
+"blue"
+'''
 
-url = "https://data.source.coop/cboettig/pad-us-3/pad-mobi.pmtiles"
 
-style = {
+manager = {
+            'property': 'bucket',
+            'type': 'categorical',
+            'stops': [
+                ['public', public_color],
+                ['private', private_color],
+                ['mixed', mixed_color],
+                ['tribal', tribal_color]
+            ]
+            }
+easement = {
+            'property': 'FeatClass',
+            'type': 'categorical',
+            'stops': [
+                ['Fee', public_color],
+                ['Easement', private_color],
+                ['Proclamation', tribal_color]
+            ]
+            }
+
+gap = {
+        'property': 'GAP_Sts',
+        'type': 'categorical',
+        'stops': [
+            ['1', "#26633d"],
+            ['2', "#879647"],
+            ['3', "#BBBBBB"],
+            ['4', "#00000000"]
+        ]
+        }
+
+IUCN = {
+            'property': 'IUCN_Cat',
+            'type': 'categorical',
+            'stops': [
+                       ["Ia", "#4B0082"],
+                       ["Ib", "#663399"],
+                       ["II", "#7B68EE"],
+                       ["III", "#9370DB"],
+                       ["IV", "#8A2BE2"],
+                       ["V", "#9932CC"],
+                       ["VI", "#9400D3"],
+                       ["Other Conservation Area", "#DDA0DD"],
+                       ["Unassigned", "#00000000"]
+            ]
+            }
+
+
+
+
+thresholds = ['case',
+              ['<', ['get', 'richness'], low],
+               private_color,
+              ['>=', ['get', 'richness'], high],
+               mixed_color,
+               public_color # default
+             ]
+
+richness = ["interpolate",
+           ["linear"],
+           ["get", "richness"],
+           0, "#FFE6EE",
+           4.8, "#850101"
+           ]
+
+rsr =  ["interpolate",
+       ["linear"],
+       ["get", "rsr"],
+       0, "#FFE6EE",
+       0.006, "#850101"
+       ]
+
+
+def pad_style(paint, alpha):
+    return {
     "version": 8,
     "sources": {
         "pad": {
             "type": "vector",
-            "url": "pmtiles://" + url,
+            "url": "pmtiles://" + pad_pmtiles,
             "attribution": "US PAD v3"}},
     "layers": [{
             "id": "public",
             "source": "pad",
             "source-layer": "pad-mobi",
             "type": "fill",
-            "paint": paint_fill
+            "paint": {
+                "fill-color": paint,
+                "fill-opacity": alpha
+            }
         }]}
-m = leafmap.Map(center=[35, -100], 
-                zoom=4, 
-                layers_control=True,
-                draw_control=False,
-                measure_control=False,
-                fullscreen_control=True)
-#m.add_basemap("CartoDB.DarkMatter")
-
-m.add_basemap("Esri.WorldShadedRelief")
-
-m.add_tile_layer(
-    url="https://minio.carlboettiger.info/shared-data/mobi-tiles/red/{z}/{x}/{y}.png",
-    name="MOBI Species Richness",
-    attribution="NatureServe",
-    opacity=0.9
-)
 
 
-m.add_pmtiles(url, name="Protected Areas (PAD-US-3)", style=style, overlay=True, show=True, zoom_to_layer=False)
+
+# +
+## Map controls sidebar
+
+with st.sidebar:
+    "## Basemaps"
+    if st.toggle("Shaded Relief Topo"):
+        m.add_basemap("Esri.WorldShadedRelief")
+
+
+    boundaries = st.radio("Boundaries:",
+                          ["None",
+                           "State Boundaries",
+                           "County Boundaries",
+                           "Congressional District",  
+                           "custom"]
+    )
+
+    "## Raster layers"
+    
+    if st.toggle("Species Richness"):
+        m.add_tile_layer(url="https://data.source.coop/cboettig/mobi/tiles/red/species-richness-all/{z}/{x}/{y}.png",
+                         name="MOBI Species Richness",
+                         attribution="NatureServe",
+                         opacity=0.9
+                        )
+    
+    if st.toggle("Range-Size Rarity"):
+          m.add_tile_layer(url="https://data.source.coop/cboettig/mobi/tiles/green/range-size-rarity-all/{z}/{x}/{y}.png",
+                         name="MOBI Range-Size Rarity",
+                         attribution="NatureServe",
+                         opacity=0.9
+                        )
+        #m.add_cog_layer("https://data.source.coop/cboettig/mobi/range-size-rarity-all/RSR_All.tif",
+        #                palette="greens", name="Range-Size Rarity", transparent_bg=True, opacity = 0.9, zoom_to_layer=False)
+
+    if st.toggle("Carbon Lost (2002-2022)"):
+        m.add_cog_layer("https://data.source.coop/vizzuality/lg-land-carbon-data/deforest_carbon_100m_cog.tif",
+                        palette="reds", name="Carbon Lost (2002-2022)", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
+
+    
+    if st.toggle("Irrecoverable Carbon"):
+        m.add_cog_layer("https://data.source.coop/cboettig/carbon/cogs/irrecoverable_c_total_2018.tif",
+                        palette="purples", name="Irrecoverable Carbon", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
+
+    if st.toggle("Managable Carbon"):
+       m.add_cog_layer("https://data.source.coop/cboettig/carbon/cogs/managable_c_total_2018.tif",
+                        palette="greens", name="Managable Carbon", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
+
+    if st.toggle("Human Impact"):
+        hi="https://data.source.coop/vizzuality/hfp-100/hfp_2021_100m_v1-2_cog.tif"
+        m.add_cog_layer(hi, palette="purples", name="Human Impact", transparent_bg=True, opacity = 0.8, zoom_to_layer=False)
+
+    "## Protected Areas"
+    
+    style_dict = {"Manager Type": manager,
+              "Fee/Easement": easement,
+              "GAP Status Code": gap,
+              "IUCN Status Code": IUCN,
+              "Mean Richness": richness,
+              "Mean RSR": rsr,
+              "custom": eval(custom_style)}
+    
+    if st.toggle("PAD US-3", True):
+        alpha = st.slider("transparency", 0.0, 1.1, 0.5)
+        style_choice = st.radio("Color protected Areas by", style_dict)
+
+        style=pad_style(style_dict[style_choice], alpha)
+        m.add_pmtiles(pad_pmtiles, name="Protected Areas (PAD-US-3)", style=style, overlay=True, show=True, zoom_to_layer=False)
+   
+   
+    
+    # Fire Polygons, USGS
+    if st.toggle("Fire boundaries"):
+        usgs = "https://data.source.coop/cboettig/fire/usgs-mtbs.pmtiles"
+        combined_style = {
+            "version": 8,
+            "sources": {
+                "source1": {
+                    "type": "vector",
+                    "url": "pmtiles://" + usgs,
+                    "attribution": "USGS"}},
+            "layers": [{
+                    "id": "usgs",
+                    "source": "source1",
+                    "source-layer": "mtbs_perims_DD",
+                    "type": "fill",
+                    "paint": {"fill-color": "#FFA500", "fill-opacity": 0.2}}]}
+        m.add_pmtiles(usgs, name="Fire", style=combined_style, overlay=True, show=True, zoom_to_layer=False)
 
 
-m.to_streamlit(height=900)
 
 # -
 
 
 
+
+
+
 # +
-#parquet = "https://data.source.coop/cboettig/pad-us-3/pad-mobi.parquet"
-parquet = "https://minio.carlboettiger.info/public-biodiversity/pad-us-3/pad-mobi.parquet"
 
-pad_data = ibis.read_parquet(parquet)
+
+# paint_fill
+
+# +
+
+# m.add_legend(legend_dict=legend_dict)
+
+m.to_streamlit(height=900)
+# -
+
+st.divider()
 
 
 # +
@@ -331,7 +383,7 @@ with col2:
 
 
 with col3: 
-    "#### Mean Range-Size Rarirty"
+    "#### Mean Range-Size Rarity"
     st.altair_chart(rsr_chart, use_container_width=True)
 
 # +

chatmap.py

@@ -38,4 +38,5 @@ if prompt := st.chat_input("What is up?"):
             stream=True,
         )
         response = st.write_stream(stream)
-    st.session_state.messages.append({"role": "assistant", "content": response})
+    st.session_state.messages.append({"role": "assistant", "content": response})
+