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- "base_uri": "https://localhost:8080/"
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- "id": "rPv_jkuhaZN8",
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- "outputId": "f452d923-7e23-4ced-d295-6000c19f0e83",
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- "tags": []
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- "outputs": [
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- {
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- "text": [
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- "\n",
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- "[notice] A new release of pip is available: 23.3.2 -> 24.0\n",
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- "[notice] To update, run: C:\\Users\\Zeus\\AppData\\Local\\Microsoft\\WindowsApps\\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\\python.exe -m pip install --upgrade pip\n"
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- ],
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- "source": [
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- "## install the packages\n",
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- "! pip install ultralytics"
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- {
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- "cell_type": "code",
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- "execution_count": 11,
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- "metadata": {
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- "colab": {
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- "base_uri": "https://localhost:8080/"
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- },
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- "id": "CDLyOpyraf2g",
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- "outputId": "7a070817-581d-4d8d-892b-2db0695ed282",
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- "tags": []
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- "outputs": [
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- {
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- "name": "stderr",
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- "output_type": "stream",
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- "text": [
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- "\n",
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- "[notice] A new release of pip is available: 23.3.2 -> 24.0\n",
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- "[notice] To update, run: C:\\Users\\Zeus\\AppData\\Local\\Microsoft\\WindowsApps\\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\\python.exe -m pip install --upgrade pip\n"
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- }
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- ],
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- "source": [
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- "! pip install torch"
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- ]
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- },
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- {
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- "cell_type": "code",
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- "execution_count": 8,
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- "metadata": {
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- "id": "7zwkmpyLainb",
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- "tags": []
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- },
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- "outputs": [],
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- "source": [
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- "# import packages\n",
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- "\n",
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- "import torch\n",
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- "import cv2\n",
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- "import os\n",
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- "from tqdm.auto import tqdm\n",
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- "import numpy as np\n",
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- "import pandas as pd\n",
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- "import tqdm"
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- ]
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- },
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- {
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- "cell_type": "code",
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- "execution_count": 26,
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- "metadata": {
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- "colab": {
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- "base_uri": "https://localhost:8080/",
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- "height": 425
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- },
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- "id": "-eVvOhSmaPr1",
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- "outputId": "6e45e02a-0109-4235-ec27-4a8a31a7e2b4",
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- "tags": []
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- },
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- "outputs": [
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- {
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- "name": "stderr",
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- "text": [
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- " 0%| | 0/1 [00:00<?, ?it/s]"
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- "name": "stdout",
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- "output_type": "stream",
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- "text": [
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\chest-x-ray-in-normal-pregnancy (1).jpg: 640x640 1 12, 3122.1ms\n",
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- "Speed: 7.2ms preprocess, 3122.1ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 640)\n",
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- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\chest-x-ray-in-normal-pregnancy.jpg: 640x640 1 12, 4982.2ms\n",
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- "Speed: 7.5ms preprocess, 4982.2ms inference, 2.4ms postprocess per image at shape (1, 3, 640, 640)\n",
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- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal-chest-radiograph-female-2.jpg: 576x640 (no detections), 3908.8ms\n",
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- "Speed: 10.8ms preprocess, 3908.8ms inference, 2.0ms postprocess per image at shape (1, 3, 576, 640)\n",
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- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal-chest-radiograph-female-3.jpg: 640x608 (no detections), 4437.5ms\n",
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- "Speed: 13.3ms preprocess, 4437.5ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 608)\n",
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- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal-chest-radiograph-female-5.jpg: 640x608 (no detections), 4389.1ms\n",
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- "Speed: 12.2ms preprocess, 4389.1ms inference, 1.8ms postprocess per image at shape (1, 3, 640, 608)\n",
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- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal-chest-radiograph-large-bmi-male.jpg: 544x640 2 12s, 3862.2ms\n",
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- "Speed: 11.4ms preprocess, 3862.2ms inference, 3.0ms postprocess per image at shape (1, 3, 544, 640)\n",
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- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal-chest-radiograph-large-bmi.jpg: 576x640 2 12s, 4185.1ms\n",
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- "Speed: 12.3ms preprocess, 4185.1ms inference, 2.2ms postprocess per image at shape (1, 3, 576, 640)\n",
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- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal-chest-radiograph-male.jpg: 640x640 (no detections), 4760.4ms\n",
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- "Speed: 15.7ms preprocess, 4760.4ms inference, 2.0ms postprocess per image at shape (1, 3, 640, 640)\n",
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- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal-chest-radiograph.jpg: 640x640 (no detections), 4430.5ms\n",
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- "Speed: 9.0ms preprocess, 4430.5ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 640)\n",
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- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal-frontal-chest-x-ray-1.jpg: 640x544 1 12, 3899.6ms\n",
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- "Speed: 7.3ms preprocess, 3899.6ms inference, 3.0ms postprocess per image at shape (1, 3, 640, 544)\n",
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- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal-frontal-chest-x-ray.jpg: 640x640 (no detections), 4240.3ms\n",
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- "Speed: 35.1ms preprocess, 4240.3ms inference, 4.1ms postprocess per image at shape (1, 3, 640, 640)\n",
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- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_240.jpg: 640x640 (no detections), 4407.5ms\n",
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- "Speed: 8.0ms preprocess, 4407.5ms inference, 2.8ms postprocess per image at shape (1, 3, 640, 640)\n",
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- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_241.jpg: 608x640 (no detections), 4234.8ms\n",
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- "Speed: 6.1ms preprocess, 4234.8ms inference, 2.0ms postprocess per image at shape (1, 3, 608, 640)\n",
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- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_242.jpg: 608x640 (no detections), 4124.6ms\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_243.jpg: 640x608 (no detections), 4887.2ms\n",
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- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
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- "\n",
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_244.jpg: 576x640 (no detections), 4015.1ms\n",
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- "Speed: 12.0ms preprocess, 4015.1ms inference, 1.1ms postprocess per image at shape (1, 3, 576, 640)\n",
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227
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- "Speed: 8.0ms preprocess, 4522.2ms inference, 2.0ms postprocess per image at shape (1, 3, 640, 640)\n",
231
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_247.jpg: 544x640 (no detections), 3494.6ms\n",
234
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235
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239
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- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_249.jpg: 640x640 (no detections), 4349.8ms\n",
242
- "Speed: 6.6ms preprocess, 4349.8ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 640)\n",
243
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244
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245
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_250.jpg: 608x640 (no detections), 3843.2ms\n",
246
- "Speed: 10.9ms preprocess, 3843.2ms inference, 3.2ms postprocess per image at shape (1, 3, 608, 640)\n",
247
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248
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249
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_251.jpg: 576x640 (no detections), 3717.5ms\n",
250
- "Speed: 6.3ms preprocess, 3717.5ms inference, 1.0ms postprocess per image at shape (1, 3, 576, 640)\n",
251
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252
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253
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_252.jpg: 576x640 (no detections), 3673.0ms\n",
254
- "Speed: 10.3ms preprocess, 3673.0ms inference, 1.0ms postprocess per image at shape (1, 3, 576, 640)\n",
255
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256
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257
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258
- "Speed: 8.6ms preprocess, 4049.4ms inference, 1.0ms postprocess per image at shape (1, 3, 576, 640)\n",
259
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260
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261
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_254.jpg: 576x640 (no detections), 3817.5ms\n",
262
- "Speed: 5.5ms preprocess, 3817.5ms inference, 2.0ms postprocess per image at shape (1, 3, 576, 640)\n",
263
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267
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268
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269
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270
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271
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272
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273
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_257.jpg: 640x640 (no detections), 4455.2ms\n",
274
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275
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276
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277
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_258.jpg: 640x640 (no detections), 4776.6ms\n",
278
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279
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280
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281
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282
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283
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284
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285
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286
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287
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288
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289
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_261.jpg: 640x640 (no detections), 4652.2ms\n",
290
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291
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292
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293
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_262.jpg: 544x640 (no detections), 3621.6ms\n",
294
- "Speed: 8.7ms preprocess, 3621.6ms inference, 1.0ms postprocess per image at shape (1, 3, 544, 640)\n",
295
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296
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297
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_263.jpg: 640x640 (no detections), 3290.7ms\n",
298
- "Speed: 9.0ms preprocess, 3290.7ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 640)\n",
299
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300
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301
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_264.jpg: 640x640 (no detections), 3600.3ms\n",
302
- "Speed: 5.2ms preprocess, 3600.3ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 640)\n",
303
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304
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305
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_265.jpg: 608x640 (no detections), 3001.3ms\n",
306
- "Speed: 5.0ms preprocess, 3001.3ms inference, 1.0ms postprocess per image at shape (1, 3, 608, 640)\n",
307
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308
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309
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_266.jpg: 576x640 (no detections), 2601.7ms\n",
310
- "Speed: 9.0ms preprocess, 2601.7ms inference, 0.0ms postprocess per image at shape (1, 3, 576, 640)\n",
311
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312
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313
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_267.jpg: 576x640 (no detections), 2567.9ms\n",
314
- "Speed: 4.1ms preprocess, 2567.9ms inference, 1.0ms postprocess per image at shape (1, 3, 576, 640)\n",
315
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316
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317
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_268.jpg: 544x640 (no detections), 2416.0ms\n",
318
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319
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320
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321
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322
- "Speed: 5.0ms preprocess, 2701.3ms inference, 2.0ms postprocess per image at shape (1, 3, 640, 640)\n",
323
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324
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325
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_270.jpg: 640x608 (no detections), 2640.0ms\n",
326
- "Speed: 7.0ms preprocess, 2640.0ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 608)\n",
327
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328
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329
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330
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331
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332
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333
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334
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335
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336
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337
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_273.jpg: 640x576 (no detections), 2384.5ms\n",
338
- "Speed: 6.0ms preprocess, 2384.5ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 576)\n",
339
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340
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341
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342
- "Speed: 4.0ms preprocess, 2654.5ms inference, 1.4ms postprocess per image at shape (1, 3, 640, 640)\n",
343
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344
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345
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346
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347
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348
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349
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350
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351
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352
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353
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354
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355
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356
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357
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358
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359
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360
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361
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362
- "Speed: 5.7ms preprocess, 2617.1ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 608)\n",
363
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364
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365
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366
- "Speed: 7.3ms preprocess, 2668.2ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 576)\n",
367
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368
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369
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370
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371
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372
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373
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374
- "Speed: 3.0ms preprocess, 2709.1ms inference, 1.0ms postprocess per image at shape (1, 3, 608, 640)\n",
375
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376
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377
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378
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379
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380
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381
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382
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383
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384
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385
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386
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387
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388
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389
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390
- "Speed: 6.1ms preprocess, 2852.1ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 640)\n",
391
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392
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393
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\normal_287.jpg: 640x640 (no detections), 3035.4ms\n",
394
- "Speed: 9.7ms preprocess, 3035.4ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 640)\n",
395
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396
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397
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398
- "Speed: 7.0ms preprocess, 2979.7ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 640)\n",
399
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400
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401
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax.jpg: 640x640 2 12s, 2726.2ms\n",
402
- "Speed: 9.6ms preprocess, 2726.2ms inference, 2.0ms postprocess per image at shape (1, 3, 640, 640)\n",
403
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404
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405
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406
- "Speed: 4.0ms preprocess, 2585.8ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 640)\n",
407
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408
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409
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410
- "Speed: 8.9ms preprocess, 2687.8ms inference, 2.0ms postprocess per image at shape (1, 3, 640, 640)\n",
411
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412
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413
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414
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415
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416
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417
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418
- "Speed: 8.0ms preprocess, 2315.9ms inference, 2.0ms postprocess per image at shape (1, 3, 640, 576)\n",
419
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420
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421
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422
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423
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424
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425
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426
- "Speed: 8.0ms preprocess, 2380.3ms inference, 2.0ms postprocess per image at shape (1, 3, 640, 576)\n",
427
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428
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429
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_15.jpg: 640x512 (no detections), 2388.5ms\n",
430
- "Speed: 9.0ms preprocess, 2388.5ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 512)\n",
431
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432
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433
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_16.jpg: 544x640 (no detections), 2464.6ms\n",
434
- "Speed: 6.0ms preprocess, 2464.6ms inference, 0.0ms postprocess per image at shape (1, 3, 544, 640)\n",
435
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436
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437
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_17.jpg: 640x608 1 12, 2433.5ms\n",
438
- "Speed: 6.0ms preprocess, 2433.5ms inference, 2.0ms postprocess per image at shape (1, 3, 640, 608)\n",
439
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
440
- "\n",
441
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_18.jpg: 544x640 (no detections), 2350.2ms\n",
442
- "Speed: 8.6ms preprocess, 2350.2ms inference, 1.5ms postprocess per image at shape (1, 3, 544, 640)\n",
443
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
444
- "\n",
445
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_19.jpg: 640x544 2 12s, 2253.8ms\n",
446
- "Speed: 7.5ms preprocess, 2253.8ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 544)\n",
447
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
448
- "\n",
449
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_2.jpg: 640x640 5 12s, 2717.7ms\n",
450
- "Speed: 6.0ms preprocess, 2717.7ms inference, 2.0ms postprocess per image at shape (1, 3, 640, 640)\n",
451
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
452
- "\n",
453
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_20.jpg: 544x640 (no detections), 2328.1ms\n",
454
- "Speed: 8.0ms preprocess, 2328.1ms inference, 1.0ms postprocess per image at shape (1, 3, 544, 640)\n",
455
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
456
- "\n",
457
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_21.jpg: 640x544 (no detections), 2251.9ms\n",
458
- "Speed: 6.0ms preprocess, 2251.9ms inference, 0.0ms postprocess per image at shape (1, 3, 640, 544)\n",
459
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
460
- "\n",
461
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_22.jpg: 544x640 (no detections), 2298.1ms\n",
462
- "Speed: 4.0ms preprocess, 2298.1ms inference, 1.0ms postprocess per image at shape (1, 3, 544, 640)\n",
463
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
464
- "\n",
465
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_23.jpg: 640x640 (no detections), 2646.4ms\n",
466
- "Speed: 7.0ms preprocess, 2646.4ms inference, 0.0ms postprocess per image at shape (1, 3, 640, 640)\n",
467
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
468
- "\n",
469
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_24.jpg: 576x640 (no detections), 2346.5ms\n",
470
- "Speed: 6.2ms preprocess, 2346.5ms inference, 0.0ms postprocess per image at shape (1, 3, 576, 640)\n",
471
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
472
- "\n",
473
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_25.jpg: 640x576 (no detections), 2653.4ms\n",
474
- "Speed: 5.0ms preprocess, 2653.4ms inference, 2.0ms postprocess per image at shape (1, 3, 640, 576)\n",
475
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
476
- "\n",
477
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_26.jpg: 640x640 (no detections), 2516.8ms\n",
478
- "Speed: 9.0ms preprocess, 2516.8ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 640)\n",
479
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
480
- "\n",
481
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_27.jpg: 640x640 (no detections), 2601.4ms\n",
482
- "Speed: 11.3ms preprocess, 2601.4ms inference, 0.0ms postprocess per image at shape (1, 3, 640, 640)\n",
483
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
484
- "\n",
485
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_28.jpg: 544x640 (no detections), 2216.8ms\n",
486
- "Speed: 4.0ms preprocess, 2216.8ms inference, 0.0ms postprocess per image at shape (1, 3, 544, 640)\n",
487
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
488
- "\n",
489
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_29.jpg: 608x640 1 12, 2216.2ms\n",
490
- "Speed: 11.5ms preprocess, 2216.2ms inference, 1.0ms postprocess per image at shape (1, 3, 608, 640)\n",
491
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
492
- "\n",
493
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_3.jpg: 640x640 5 12s, 2517.2ms\n",
494
- "Speed: 7.0ms preprocess, 2517.2ms inference, 2.2ms postprocess per image at shape (1, 3, 640, 640)\n",
495
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
496
- "\n",
497
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_30.jpg: 576x640 2 12s, 2476.1ms\n",
498
- "Speed: 5.0ms preprocess, 2476.1ms inference, 2.0ms postprocess per image at shape (1, 3, 576, 640)\n",
499
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
500
- "\n",
501
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_31.jpg: 608x640 1 12, 3539.7ms\n",
502
- "Speed: 9.6ms preprocess, 3539.7ms inference, 5.0ms postprocess per image at shape (1, 3, 608, 640)\n",
503
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
504
- "\n",
505
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_32.jpg: 576x640 (no detections), 3733.9ms\n",
506
- "Speed: 4.7ms preprocess, 3733.9ms inference, 1.0ms postprocess per image at shape (1, 3, 576, 640)\n",
507
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
508
- "\n",
509
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_33.jpg: 640x576 2 12s, 4301.1ms\n",
510
- "Speed: 14.4ms preprocess, 4301.1ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 576)\n",
511
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
512
- "\n",
513
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_34.jpg: 640x608 (no detections), 3040.5ms\n",
514
- "Speed: 46.6ms preprocess, 3040.5ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 608)\n",
515
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
516
- "\n",
517
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_35.jpg: 576x640 2 12s, 3081.7ms\n",
518
- "Speed: 5.0ms preprocess, 3081.7ms inference, 1.1ms postprocess per image at shape (1, 3, 576, 640)\n",
519
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
520
- "\n",
521
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_36.jpg: 640x352 1 12, 1573.1ms\n",
522
- "Speed: 2.0ms preprocess, 1573.1ms inference, 3.0ms postprocess per image at shape (1, 3, 640, 352)\n",
523
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
524
- "\n",
525
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_37.jpg: 640x640 (no detections), 2848.4ms\n",
526
- "Speed: 7.1ms preprocess, 2848.4ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 640)\n",
527
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
528
- "\n",
529
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_38.jpg: 640x640 (no detections), 2817.8ms\n",
530
- "Speed: 7.5ms preprocess, 2817.8ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 640)\n",
531
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
532
- "\n",
533
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_39.jpg: 640x608 (no detections), 2536.7ms\n",
534
- "Speed: 13.2ms preprocess, 2536.7ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 608)\n",
535
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
536
- "\n",
537
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_4.jpg: 640x480 (no detections), 2033.7ms\n",
538
- "Speed: 5.2ms preprocess, 2033.7ms inference, 1.5ms postprocess per image at shape (1, 3, 640, 480)\n",
539
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
540
- "\n",
541
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_40.jpg: 640x640 (no detections), 2666.4ms\n",
542
- "Speed: 7.4ms preprocess, 2666.4ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 640)\n",
543
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
544
- "\n",
545
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_41.jpg: 640x640 (no detections), 2651.1ms\n",
546
- "Speed: 7.0ms preprocess, 2651.1ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 640)\n",
547
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
548
- "\n",
549
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_42.jpg: 512x640 1 12, 2246.9ms\n",
550
- "Speed: 4.0ms preprocess, 2246.9ms inference, 2.0ms postprocess per image at shape (1, 3, 512, 640)\n",
551
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
552
- "\n",
553
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_43.jpg: 544x640 2 12s, 2312.6ms\n",
554
- "Speed: 7.0ms preprocess, 2312.6ms inference, 2.0ms postprocess per image at shape (1, 3, 544, 640)\n",
555
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
556
- "\n",
557
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_44.jpg: 544x640 1 12, 2232.2ms\n",
558
- "Speed: 7.0ms preprocess, 2232.2ms inference, 1.0ms postprocess per image at shape (1, 3, 544, 640)\n",
559
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
560
- "\n",
561
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_45.jpg: 544x640 (no detections), 2306.5ms\n",
562
- "Speed: 9.0ms preprocess, 2306.5ms inference, 1.0ms postprocess per image at shape (1, 3, 544, 640)\n",
563
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
564
- "\n",
565
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_46.jpg: 640x608 (no detections), 2751.3ms\n",
566
- "Speed: 6.0ms preprocess, 2751.3ms inference, 1.0ms postprocess per image at shape (1, 3, 640, 608)\n",
567
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
568
- "\n",
569
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_5.jpg: 544x640 (no detections), 2290.5ms\n",
570
- "Speed: 5.0ms preprocess, 2290.5ms inference, 1.0ms postprocess per image at shape (1, 3, 544, 640)\n",
571
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
572
- "\n",
573
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_6.jpg: 640x576 3 12s, 2351.8ms\n",
574
- "Speed: 6.0ms preprocess, 2351.8ms inference, 15.7ms postprocess per image at shape (1, 3, 640, 576)\n",
575
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
576
- "\n",
577
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_7.jpg: 640x480 (no detections), 2077.6ms\n",
578
- "Speed: 8.0ms preprocess, 2077.6ms inference, 0.0ms postprocess per image at shape (1, 3, 640, 480)\n",
579
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
580
- "\n",
581
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_8.jpg: 640x640 2 12s, 2559.7ms\n",
582
- "Speed: 6.8ms preprocess, 2559.7ms inference, 2.0ms postprocess per image at shape (1, 3, 640, 640)\n",
583
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n",
584
- "\n",
585
- "image 1/1 c:\\Users\\Zeus\\Downloads\\yolov8\\pneumothorax\\pneumothorax_9.jpg: 640x576 (no detections), 2332.8ms\n",
586
- "Speed: 5.0ms preprocess, 2332.8ms inference, 0.0ms postprocess per image at shape (1, 3, 640, 576)\n",
587
- "Results saved to \u001b[1mC:\\Users\\Zeus\\runs\\detect\\predict12\u001b[0m\n"
588
- ]
589
- },
590
- {
591
- "name": "stderr",
592
- "output_type": "stream",
593
- "text": [
594
- "100%|██████████| 1/1 [06:01<00:00, 361.85s/it]\n"
595
- ]
596
- }
597
- ],
598
- "source": [
599
- "from ultralytics import YOLO\n",
600
- "\n",
601
- "# Load a pretrained YOLOv8n model\n",
602
- "model = YOLO('best.pt')\n",
603
- "\n",
604
- "path_folders= ['pneumothorax']\n",
605
- "\n",
606
- "list_df=[]\n",
607
- "\n",
608
- "for path_folder in tqdm.tqdm(path_folders,leave=True):\n",
609
- "\n",
610
- " img_list = os.listdir(path_folder) # list of images in the directory\n",
611
- " list_path =[]\n",
612
- " image_list = []\n",
613
- " for image in img_list:\n",
614
- " list_path.append(os.path.join(path_folder, image))\n",
615
- " image_list.append(image)\n",
616
- "\n",
617
- " # list_path.remove('images\\\\.ipynb_checkpoints')\n",
618
- "\n",
619
- " # save images\n",
620
- " results=[]\n",
621
- " for image_path in list_path:\n",
622
- " results.append(model.predict(image_path, save=True, conf=0.1, batch=2))\n",
623
- " \n",
624
- "\n",
625
- " # get clases\n",
626
- " all_predictions = []\n",
627
- " for result in results:\n",
628
- " boxes = result[0].boxes\n",
629
- " boxes = boxes.cls.cpu().numpy().tolist()\n",
630
- " all_predictions.append(boxes)\n",
631
- "\n",
632
- " df = pd.DataFrame()\n",
633
- " df['image_name'] = image_list\n",
634
- " df['predictions'] = all_predictions\n",
635
- " list_df.append(df)"
636
- ]
637
- },
638
- {
639
- "cell_type": "code",
640
- "execution_count": 27,
641
- "metadata": {
642
- "tags": []
643
- },
644
- "outputs": [
645
- {
646
- "data": {
647
- "text/html": [
648
- "<div>\n",
649
- "<style scoped>\n",
650
- " .dataframe tbody tr th:only-of-type {\n",
651
- " vertical-align: middle;\n",
652
- " }\n",
653
- "\n",
654
- " .dataframe tbody tr th {\n",
655
- " vertical-align: top;\n",
656
- " }\n",
657
- "\n",
658
- " .dataframe thead th {\n",
659
- " text-align: right;\n",
660
- " }\n",
661
- "</style>\n",
662
- "<table border=\"1\" class=\"dataframe\">\n",
663
- " <thead>\n",
664
- " <tr style=\"text-align: right;\">\n",
665
- " <th></th>\n",
666
- " <th>image_name</th>\n",
667
- " <th>predictions</th>\n",
668
- " </tr>\n",
669
- " </thead>\n",
670
- " <tbody>\n",
671
- " <tr>\n",
672
- " <th>0</th>\n",
673
- " <td>chest-x-ray-in-normal-pregnancy (1).jpg</td>\n",
674
- " <td>[0.0]</td>\n",
675
- " </tr>\n",
676
- " <tr>\n",
677
- " <th>1</th>\n",
678
- " <td>chest-x-ray-in-normal-pregnancy.jpg</td>\n",
679
- " <td>[0.0]</td>\n",
680
- " </tr>\n",
681
- " <tr>\n",
682
- " <th>2</th>\n",
683
- " <td>normal-chest-radiograph-female-2.jpg</td>\n",
684
- " <td>[]</td>\n",
685
- " </tr>\n",
686
- " <tr>\n",
687
- " <th>3</th>\n",
688
- " <td>normal-chest-radiograph-female-3.jpg</td>\n",
689
- " <td>[]</td>\n",
690
- " </tr>\n",
691
- " <tr>\n",
692
- " <th>4</th>\n",
693
- " <td>normal-chest-radiograph-female-5.jpg</td>\n",
694
- " <td>[]</td>\n",
695
- " </tr>\n",
696
- " <tr>\n",
697
- " <th>...</th>\n",
698
- " <td>...</td>\n",
699
- " <td>...</td>\n",
700
- " </tr>\n",
701
- " <tr>\n",
702
- " <th>95</th>\n",
703
- " <td>pneumothorax_40.jpg</td>\n",
704
- " <td>[]</td>\n",
705
- " </tr>\n",
706
- " <tr>\n",
707
- " <th>96</th>\n",
708
- " <td>pneumothorax_41.jpg</td>\n",
709
- " <td>[]</td>\n",
710
- " </tr>\n",
711
- " <tr>\n",
712
- " <th>97</th>\n",
713
- " <td>pneumothorax_42.jpg</td>\n",
714
- " <td>[0.0]</td>\n",
715
- " </tr>\n",
716
- " <tr>\n",
717
- " <th>98</th>\n",
718
- " <td>pneumothorax_43.jpg</td>\n",
719
- " <td>[0.0, 0.0]</td>\n",
720
- " </tr>\n",
721
- " <tr>\n",
722
- " <th>99</th>\n",
723
- " <td>pneumothorax_44.jpg</td>\n",
724
- " <td>[0.0]</td>\n",
725
- " </tr>\n",
726
- " </tbody>\n",
727
- "</table>\n",
728
- "<p>100 rows × 2 columns</p>\n",
729
- "</div>"
730
- ],
731
- "text/plain": [
732
- " image_name predictions\n",
733
- "0 chest-x-ray-in-normal-pregnancy (1).jpg [0.0]\n",
734
- "1 chest-x-ray-in-normal-pregnancy.jpg [0.0]\n",
735
- "2 normal-chest-radiograph-female-2.jpg []\n",
736
- "3 normal-chest-radiograph-female-3.jpg []\n",
737
- "4 normal-chest-radiograph-female-5.jpg []\n",
738
- ".. ... ...\n",
739
- "95 pneumothorax_40.jpg []\n",
740
- "96 pneumothorax_41.jpg []\n",
741
- "97 pneumothorax_42.jpg [0.0]\n",
742
- "98 pneumothorax_43.jpg [0.0, 0.0]\n",
743
- "99 pneumothorax_44.jpg [0.0]\n",
744
- "\n",
745
- "[100 rows x 2 columns]"
746
- ]
747
- },
748
- "execution_count": 27,
749
- "metadata": {},
750
- "output_type": "execute_result"
751
- }
752
- ],
753
- "source": [
754
- "list_df[0].head(100)"
755
- ]
756
- },
757
- {
758
- "cell_type": "code",
759
- "execution_count": 28,
760
- "metadata": {},
761
- "outputs": [],
762
- "source": [
763
- "## Saving each df (three class yolov8)\n",
764
- "\n",
765
- "df_pneumothorax=list_df[0]"
766
- ]
767
- },
768
- {
769
- "cell_type": "code",
770
- "execution_count": 29,
771
- "metadata": {},
772
- "outputs": [],
773
- "source": [
774
- "## Exporting the individual dataframes to csv files (three class v8)\n",
775
- "\n",
776
- "\n",
777
- "df_pneumothorax.to_csv('pneumothorax_v8.csv')"
778
- ]
779
- },
780
- {
781
- "cell_type": "code",
782
- "execution_count": 25,
783
- "metadata": {},
784
- "outputs": [],
785
- "source": [
786
- "# ## Saving each df\n",
787
- "# df_aortic=list_df[0]\n",
788
- "# df_atelec=list_df[1]\n",
789
- "# df_cal=list_df[2]\n",
790
- "# df_cardio=list_df[3]\n",
791
- "# df_ild=list_df[4]\n",
792
- "# df_opacity=list_df[5]\n",
793
- "# df_nodules=list_df[6]\n",
794
- "# df_effusion=list_df[7]\n",
795
- "# df_pneumothorax=list_df[8]"
796
- ]
797
- },
798
- {
799
- "cell_type": "code",
800
- "execution_count": 26,
801
- "metadata": {
802
- "tags": []
803
- },
804
- "outputs": [],
805
- "source": [
806
- "## Exporting the individual dataframes to csv files\n",
807
- "# df_aortic.to_csv('aortic_v8.csv')\n",
808
- "# df_atelec.to_csv('atelec_v8.csv')\n",
809
- "# df_cal.to_csv('calcifications_v8.csv')\n",
810
- "# df_cardio.to_csv('cardiomegaly_v8.csv')\n",
811
- "# df_ild.to_csv('ild_v8.csv')\n",
812
- "# df_opacity.to_csv('opacity_v8.csv')\n",
813
- "# df_nodules.to_csv('nodules_v8.csv')\n",
814
- "# df_effusion.to_csv('effusion_v8.csv')\n",
815
- "# df_pneumothorax.to_csv('pneumothorax_v8.csv')"
816
- ]
817
- }
818
- ],
819
- "metadata": {
820
- "accelerator": "GPU",
821
- "colab": {
822
- "gpuType": "T4",
823
- "provenance": []
824
- },
825
- "kernelspec": {
826
- "display_name": "Python 3 (ipykernel)",
827
- "language": "python",
828
- "name": "python3"
829
- },
830
- "language_info": {
831
- "codemirror_mode": {
832
- "name": "ipython",
833
- "version": 3
834
- },
835
- "file_extension": ".py",
836
- "mimetype": "text/x-python",
837
- "name": "python",
838
- "nbconvert_exporter": "python",
839
- "pygments_lexer": "ipython3",
840
- "version": "3.11.8"
841
- }
842
- },
843
- "nbformat": 4,
844
- "nbformat_minor": 4
845
- }