import gradio as gr import numpy as np import nrrd import matplotlib.pyplot as plt import io from PIL import Image # Set Matplotlib to use the 'Agg' backend plt.switch_backend('Agg') def load_nrrd(file_path): data, _ = nrrd.read(file_path.name) num_slices = data.shape[2] return data, num_slices def visualize_slice(file_path, slice_index): data, num_slices = load_nrrd(file_path) # Ensure the slice index is within the range of available slices slice_index = min(max(0, slice_index), num_slices - 1) slice_image = data[:, :, slice_index] # Plot the slice fig, ax = plt.subplots() ax.imshow(slice_image, cmap='gray') plt.axis('off') # Convert matplotlib figure to PIL Image buf = io.BytesIO() fig.savefig(buf, format='png') plt.close(fig) buf.seek(0) pil_img = Image.open(buf) return pil_img def update_slider(file_path): _, num_slices = load_nrrd(file_path) return gr.update(maximum=num_slices-1, value=0) with gr.Blocks() as app: gr.Markdown("## NRRD Slice Visualizer") gr.Markdown("Upload an NRRD file and use the slider to select and visualize slices.") file_input = gr.File(label="Upload NRRD File") slider = gr.Slider(minimum=0, maximum=1, step=1, value=0, label="Slice Selector") image_output = gr.Image(type="pil", label="Selected Slice") file_input.change(fn=update_slider, inputs=file_input, outputs=slider) file_input.change(fn=visualize_slice, inputs=[file_input, slider], outputs=image_output) slider.change(fn=visualize_slice, inputs=[file_input, slider], outputs=image_output) app.launch()