dmolino commited on
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0eb87ca
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1 Parent(s): 99d9db8

Update app.py

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Files changed (1) hide show
  1. app.py +54 -37
app.py CHANGED
@@ -16,22 +16,39 @@ def image_to_base64(image_path):
16
  return base64.b64encode(img_file.read()).decode()
17
 
18
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
19
  device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
20
 
21
  # Dati di esempio predefiniti
22
  esempi = {
23
- "Frontal -> Lateral": {'Frontal': 'FtoL.png', 'Lateral': 'LfromF.png'},
24
- "Frontal -> Report": {'Frontal': '31d9847f-987fcf63-704f7496-d2b21eb8-63cd973e.tiff', 'Report': 'Small bilateral pleural effusions, left greater than right.'},
25
- "Frontal -> Lateral + Report": {'Frontal': '81bca127-0c416084-67f8033c-ecb26476-6d1ecf60.tiff', 'Lateral': 'd52a0c5c-bb7104b0-b1d821a5-959984c3-33c04ccb.tiff', 'Report': 'No acute intrathoracic process. Heart Size is normal. Lungs are clear. No pneumothorax'},
26
- "Lateral -> Frontal": {'Lateral': 'LtoF.png', 'Frontal': 'FfromL.png'},
27
- "Lateral -> Report": {'Lateral': 'd52a0c5c-bb7104b0-b1d821a5-959984c3-33c04ccb.tiff', 'Report': 'no acute cardiopulmonary process. if concern for injury persists, a dedicated rib series with markers would be necessary to ensure no rib fractures.'},
28
- "Lateral -> Frontal + Report": {'Lateral': 'reald52a0c5c-bb7104b0-b1d821a5-959984c3-33c04ccb.tiff', 'Frontal': 'ab37274f-b4c1fc04-e2ff24b4-4a130ba3-cd167968.tiff', 'Report': 'No acute intrathoracic process. If there is strong concern for rib fracture, a dedicated rib series may be performed.'},
29
- "Report -> Frontal": {'Report': 'Left lung opacification which may reflect pneumonia superimposed on metastatic disease.', 'Frontal': '02aa804e-bde0afdd-112c0b34-7bc16630-4e384014.tiff'},
30
- "Report -> Lateral": {'Report': 'Bilateral pleural effusions, cardiomegaly and mild edema suggest fluid overload.', 'Lateral': '489faba7-a9dc5f1d-fd7241d6-9638d855-eaa952b1.tiff'},
31
- "Report -> Frontal + Lateral": {'Report': 'No acute intrathoracic process. The lungs are clean and heart is normal size.', 'Frontal': 'f27ba7cd-44486c2e-29f3e890-f2b9f94e-84110448.tiff', 'Lateral': 'b20c9570-de77944a-b8604ba0-73305a7b-d608a72b.tiff'},
32
- "Frontal + Lateral -> Report": {'Frontal': '95856dd1-5878b5b1-9c104817-760c0122-6187946f.tiff', 'Lateral': '3723d912-71940d69-4fef2dd2-27af5a7b-127ba20c.tiff', 'Report': 'Opacities in the right upper or middle lobe, maybe early pneumonia.'},
33
- "Frontal + Report -> Lateral": {'Frontal': 'e7f21453-7956d79a-44e44614-fae8ff16-d174d1a0.tiff', 'Report': 'No focal consolidation.', 'Lateral': '8037e6b9-06367464-a4ccd63a-5c5c5a81-ce3e7ffc.tiff'},
34
- "Lateral + Report -> Frontal": {'Lateral': '02c66644-b1883a91-54aed0e7-62d25460-398f9865.tiff', 'Report': 'No evidence of acute cardiopulmonary process.', 'Frontal': 'b1f169f1-12177dd5-2fa1c4b1-7b816311-85d769e9.tiff'}
35
  }
36
 
37
 
@@ -141,7 +158,7 @@ if st.session_state['step'] == 1:
141
 
142
  # Immagine con didascalia migliorata e con dimensione della caption aumentata
143
  image_path = "./DEMO/Loghi/model_final.png" # Sostituisci con il percorso della tua immagine
144
- st.image(image_path, caption='', use_container_width=True)
145
 
146
  # Caption con dimensione del testo migliorata
147
  st.markdown("""
@@ -163,10 +180,10 @@ if st.session_state['step'] == 1:
163
  if st.session_state['step'] == 2:
164
  # Opzioni disponibili
165
  options = [
166
- "Frontal -> Lateral", "Frontal -> Report", "Frontal -> Lateral + Report",
167
- "Lateral -> Frontal", "Lateral -> Report", "Lateral -> Frontal + Report",
168
- "Report -> Frontal", "Report -> Lateral", "Report -> Frontal + Lateral",
169
- "Frontal + Lateral -> Report", "Frontal + Report -> Lateral", "Lateral + Report -> Frontal"
170
  ]
171
 
172
  # Messaggio di selezione con dimensione aumentata
@@ -220,17 +237,17 @@ if st.session_state['step'] == 3:
220
  unsafe_allow_html=True)
221
 
222
  # Carica l'immagine frontale
223
- if "Frontal" in st.session_state['selected_option'].split(" ->")[0]:
224
  st.markdown("<h5 style='font-size: 18px;'>Load the Frontal X-ray in DICOM format</h5>", unsafe_allow_html=True)
225
  st.session_state['frontal_file'] = st.file_uploader("", type=["dcm"])
226
 
227
  # Carica l'immagine laterale
228
- if "Lateral" in st.session_state['selected_option'].split(" ->")[0]:
229
  st.markdown("<h5 style='font-size: 18px;'>Load the Lateral X-ray in DICOM format</h5>", unsafe_allow_html=True)
230
  st.session_state['lateral_file'] = st.file_uploader("", type=["dcm"])
231
 
232
  # Inserisci il report clinico
233
- if "Report" in st.session_state['selected_option'].split(" ->")[0]:
234
  st.markdown("<h5 style='font-size: 18px;'>Type the clinical report</h5>", unsafe_allow_html=True)
235
  st.session_state['report'] = st.text_area("", value=st.session_state['report'])
236
 
@@ -249,11 +266,11 @@ if st.session_state['step'] == 3:
249
  with st.spinner("Preprocessing the data..."):
250
  time.sleep(3)
251
  # Controllo che i file necessari siano stati caricati
252
- if "Frontal" in st.session_state['selected_option'].split(" ->")[0] and not st.session_state['frontal_file']:
253
  st.error("Load the Frontal image.")
254
- elif "Lateral" in st.session_state['selected_option'].split(" ->")[0] and not st.session_state['lateral_file']:
255
  st.error("Load the Lateral image.")
256
- elif "Report" in st.session_state['selected_option'].split(" ->")[0] and not st.session_state['report']:
257
  st.error("Type the clinical report.")
258
  else:
259
  st.write(f"Execution of: {st.session_state['selected_option']}")
@@ -319,20 +336,20 @@ if st.session_state['step'] == 3:
319
  st.write(f"Loaded Report: {report}")
320
 
321
  inputs = []
322
- if "Frontal" in st.session_state['selected_option'].split(" ->")[0]:
323
  inputs.append('frontal')
324
- if "Lateral" in st.session_state['selected_option'].split(" ->")[0]:
325
  inputs.append('lateral')
326
- if "Report" in st.session_state['selected_option'].split(" ->")[0]:
327
  inputs.append('text')
328
 
329
  # Ora vediamo cosa c'Γ¨ dopo la freccia
330
  outputs = []
331
- if "Frontal" in st.session_state['selected_option'].split(" ->")[1]:
332
  outputs.append('frontal')
333
- if "Lateral" in st.session_state['selected_option'].split(" ->")[1]:
334
  outputs.append('lateral')
335
- if "Report" in st.session_state['selected_option'].split(" ->")[1]:
336
  outputs.append('text')
337
 
338
  # Ultima cosa che va fatta Γ¨ passare allo step 4, prima di farlo perΓ², tutte le variabili che ci servono
@@ -383,26 +400,26 @@ if st.session_state['step'] == 5:
383
  unsafe_allow_html=True)
384
 
385
  inputs = []
386
- if "Frontal" in st.session_state['selected_option'].split(" ->")[0]:
387
  inputs.append('Frontal')
388
- if "Lateral" in st.session_state['selected_option'].split(" ->")[0]:
389
  inputs.append('Lateral')
390
- if "Report" in st.session_state['selected_option'].split(" ->")[0]:
391
  inputs.append('Report')
392
 
393
  outputs = []
394
- if "Frontal" in st.session_state['selected_option'].split(" ->")[1]:
395
  outputs.append('Frontal')
396
- if "Lateral" in st.session_state['selected_option'].split(" ->")[1]:
397
  outputs.append('Lateral')
398
- if "Report" in st.session_state['selected_option'].split(" ->")[1]:
399
  outputs.append('Report')
400
 
401
  esempio = esempi[st.session_state['selected_option']]
402
 
403
  # Mostra i file associati all'esempio
404
  st.markdown(
405
- "<h3 style='text-align: justify'><strong>INPUTS</strong></h3>",
406
  unsafe_allow_html=True)
407
 
408
  # Colonne per gli INPUTS
@@ -431,7 +448,7 @@ if st.session_state['step'] == 5:
431
  st.write(f"Report: {esempio['Report']}")
432
 
433
  st.markdown(
434
- "<h3 style='text-align: justify'><strong>OUTPUTS</strong></h3>",
435
  unsafe_allow_html=True)
436
 
437
  # Colonne per gli OUTPUTS
 
16
  return base64.b64encode(img_file.read()).decode()
17
 
18
 
19
+ st.markdown("""
20
+ <style>
21
+ @font-face {
22
+ font-family: 'Palatino';
23
+ font-style: normal;
24
+ font-weight: 400;
25
+ src: local('Palatino Linotype'), local('Book Antiqua'),
26
+ url(https://fonts.gstatic.com/s/cardo/v22/wlp_gwIBjINFON1YNFX6WcrrlQ.ttf) format('truetype');
27
+ }
28
+ /* Applica il font a tutto */
29
+ html, body, [class*="st"] {
30
+ font-family: 'Palatino', serif;
31
+ }
32
+ </style>
33
+ """, unsafe_allow_html=True)
34
+
35
+
36
  device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
37
 
38
  # Dati di esempio predefiniti
39
  esempi = {
40
+ "Frontal βž” Lateral": {'Frontal': 'FtoL.png', 'Lateral': 'LfromF.png'},
41
+ "Frontal βž” Report": {'Frontal': '31d9847f-987fcf63-704f7496-d2b21eb8-63cd973e.tiff', 'Report': 'Small bilateral pleural effusions, left greater than right.'},
42
+ "Frontal βž” Lateral + Report": {'Frontal': '81bca127-0c416084-67f8033c-ecb26476-6d1ecf60.tiff', 'Lateral': 'd52a0c5c-bb7104b0-b1d821a5-959984c3-33c04ccb.tiff', 'Report': 'No acute intrathoracic process. Heart Size is normal. Lungs are clear. No pneumothorax'},
43
+ "Lateral βž” Frontal": {'Lateral': 'LtoF.png', 'Frontal': 'FfromL.png'},
44
+ "Lateral βž” Report": {'Lateral': 'd52a0c5c-bb7104b0-b1d821a5-959984c3-33c04ccb.tiff', 'Report': 'no acute cardiopulmonary process. if concern for injury persists, a dedicated rib series with markers would be necessary to ensure no rib fractures.'},
45
+ "Lateral βž” Frontal + Report": {'Lateral': 'reald52a0c5c-bb7104b0-b1d821a5-959984c3-33c04ccb.tiff', 'Frontal': 'ab37274f-b4c1fc04-e2ff24b4-4a130ba3-cd167968.tiff', 'Report': 'No acute intrathoracic process. If there is strong concern for rib fracture, a dedicated rib series may be performed.'},
46
+ "Report βž” Frontal": {'Report': 'Left lung opacification which may reflect pneumonia superimposed on metastatic disease.', 'Frontal': '02aa804e-bde0afdd-112c0b34-7bc16630-4e384014.tiff'},
47
+ "Report βž” Lateral": {'Report': 'Bilateral pleural effusions, cardiomegaly and mild edema suggest fluid overload.', 'Lateral': '489faba7-a9dc5f1d-fd7241d6-9638d855-eaa952b1.tiff'},
48
+ "Report βž” Frontal + Lateral": {'Report': 'No acute intrathoracic process. The lungs are clean and heart is normal size.', 'Frontal': 'f27ba7cd-44486c2e-29f3e890-f2b9f94e-84110448.tiff', 'Lateral': 'b20c9570-de77944a-b8604ba0-73305a7b-d608a72b.tiff'},
49
+ "Frontal + Lateral βž” Report": {'Frontal': '95856dd1-5878b5b1-9c104817-760c0122-6187946f.tiff', 'Lateral': '3723d912-71940d69-4fef2dd2-27af5a7b-127ba20c.tiff', 'Report': 'Opacities in the right upper or middle lobe, maybe early pneumonia.'},
50
+ "Frontal + Report βž” Lateral": {'Frontal': 'e7f21453-7956d79a-44e44614-fae8ff16-d174d1a0.tiff', 'Report': 'No focal consolidation.', 'Lateral': '8037e6b9-06367464-a4ccd63a-5c5c5a81-ce3e7ffc.tiff'},
51
+ "Lateral + Report βž” Frontal": {'Lateral': '02c66644-b1883a91-54aed0e7-62d25460-398f9865.tiff', 'Report': 'No evidence of acute cardiopulmonary process.', 'Frontal': 'b1f169f1-12177dd5-2fa1c4b1-7b816311-85d769e9.tiff'}
52
  }
53
 
54
 
 
158
 
159
  # Immagine con didascalia migliorata e con dimensione della caption aumentata
160
  image_path = "./DEMO/Loghi/model_final.png" # Sostituisci con il percorso della tua immagine
161
+ st.image(image_path, caption='', use_column_width=True)
162
 
163
  # Caption con dimensione del testo migliorata
164
  st.markdown("""
 
180
  if st.session_state['step'] == 2:
181
  # Opzioni disponibili
182
  options = [
183
+ "Frontal βž” Lateral", "Frontal βž” Report", "Frontal βž” Lateral + Report",
184
+ "Lateral βž” Frontal", "Lateral βž” Report", "Lateral βž” Frontal + Report",
185
+ "Report βž” Frontal", "Report βž” Lateral", "Report βž” Frontal + Lateral",
186
+ "Frontal + Lateral βž” Report", "Frontal + Report βž” Lateral", "Lateral + Report βž” Frontal"
187
  ]
188
 
189
  # Messaggio di selezione con dimensione aumentata
 
237
  unsafe_allow_html=True)
238
 
239
  # Carica l'immagine frontale
240
+ if "Frontal" in st.session_state['selected_option'].split(" βž”")[0]:
241
  st.markdown("<h5 style='font-size: 18px;'>Load the Frontal X-ray in DICOM format</h5>", unsafe_allow_html=True)
242
  st.session_state['frontal_file'] = st.file_uploader("", type=["dcm"])
243
 
244
  # Carica l'immagine laterale
245
+ if "Lateral" in st.session_state['selected_option'].split(" βž”")[0]:
246
  st.markdown("<h5 style='font-size: 18px;'>Load the Lateral X-ray in DICOM format</h5>", unsafe_allow_html=True)
247
  st.session_state['lateral_file'] = st.file_uploader("", type=["dcm"])
248
 
249
  # Inserisci il report clinico
250
+ if "Report" in st.session_state['selected_option'].split(" βž”")[0]:
251
  st.markdown("<h5 style='font-size: 18px;'>Type the clinical report</h5>", unsafe_allow_html=True)
252
  st.session_state['report'] = st.text_area("", value=st.session_state['report'])
253
 
 
266
  with st.spinner("Preprocessing the data..."):
267
  time.sleep(3)
268
  # Controllo che i file necessari siano stati caricati
269
+ if "Frontal" in st.session_state['selected_option'].split(" βž”")[0] and not st.session_state['frontal_file']:
270
  st.error("Load the Frontal image.")
271
+ elif "Lateral" in st.session_state['selected_option'].split(" βž”")[0] and not st.session_state['lateral_file']:
272
  st.error("Load the Lateral image.")
273
+ elif "Report" in st.session_state['selected_option'].split(" βž”")[0] and not st.session_state['report']:
274
  st.error("Type the clinical report.")
275
  else:
276
  st.write(f"Execution of: {st.session_state['selected_option']}")
 
336
  st.write(f"Loaded Report: {report}")
337
 
338
  inputs = []
339
+ if "Frontal" in st.session_state['selected_option'].split(" βž”")[0]:
340
  inputs.append('frontal')
341
+ if "Lateral" in st.session_state['selected_option'].split(" βž”")[0]:
342
  inputs.append('lateral')
343
+ if "Report" in st.session_state['selected_option'].split(" βž”")[0]:
344
  inputs.append('text')
345
 
346
  # Ora vediamo cosa c'Γ¨ dopo la freccia
347
  outputs = []
348
+ if "Frontal" in st.session_state['selected_option'].split(" βž”")[1]:
349
  outputs.append('frontal')
350
+ if "Lateral" in st.session_state['selected_option'].split(" βž”")[1]:
351
  outputs.append('lateral')
352
+ if "Report" in st.session_state['selected_option'].split(" βž”")[1]:
353
  outputs.append('text')
354
 
355
  # Ultima cosa che va fatta Γ¨ passare allo step 4, prima di farlo perΓ², tutte le variabili che ci servono
 
400
  unsafe_allow_html=True)
401
 
402
  inputs = []
403
+ if "Frontal" in st.session_state['selected_option'].split(" βž”")[0]:
404
  inputs.append('Frontal')
405
+ if "Lateral" in st.session_state['selected_option'].split(" βž”")[0]:
406
  inputs.append('Lateral')
407
+ if "Report" in st.session_state['selected_option'].split(" βž”")[0]:
408
  inputs.append('Report')
409
 
410
  outputs = []
411
+ if "Frontal" in st.session_state['selected_option'].split(" βž”")[1]:
412
  outputs.append('Frontal')
413
+ if "Lateral" in st.session_state['selected_option'].split(" βž”")[1]:
414
  outputs.append('Lateral')
415
+ if "Report" in st.session_state['selected_option'].split(" βž”")[1]:
416
  outputs.append('Report')
417
 
418
  esempio = esempi[st.session_state['selected_option']]
419
 
420
  # Mostra i file associati all'esempio
421
  st.markdown(
422
+ "<h3 style='text-align: center'><strong>INPUT:</strong></h3>",
423
  unsafe_allow_html=True)
424
 
425
  # Colonne per gli INPUTS
 
448
  st.write(f"Report: {esempio['Report']}")
449
 
450
  st.markdown(
451
+ "<h3 style='text-align: center'><strong>OUTPUT:</strong></h3>",
452
  unsafe_allow_html=True)
453
 
454
  # Colonne per gli OUTPUTS