diff --git a/Images/Annotated/augment.py b/Images/Annotated/augment.py
deleted file mode 100644
index 6983b93ce831d7516bce0d82a569634b910a14e7..0000000000000000000000000000000000000000
--- a/Images/Annotated/augment.py
+++ /dev/null
@@ -1,90 +0,0 @@
-import imgaug as ia
-from imgaug import augmenters as iaa
-import numpy as np
-import cv2
-from pascal_voc_writer import Writer
-import xml.etree.ElementTree as ET
-import glob
-from util import sequence_simple, sequence_resize
-from util import annotation as an
-import shutil
-import sys
-
-INPUT_DIR = './images'
-OUTPUT_DIR = './augmented'
-AUGMENT_SIZE = 10
-
-
-def main():
- global INPUT_DIR
- for classname in glob.glob(INPUT_DIR + "/"):
- print(classname)
- INPUT_DIR = classname
- print(OUTPUT_DIR)
-
- for file in glob.glob('%s/*.xml' % INPUT_DIR):
- print('Augmenting %s ...' % file)
- annotation = an.parse_xml(file)
- augment(annotation)
-
- for file in glob.glob('%s/*.xml' % OUTPUT_DIR):
- an.inspect(file)
-
-
-def augment(annotation):
- seq = sequence_resize.get()
-
- for i in range(AUGMENT_SIZE):
- filename = annotation['filename']
- sp = filename.split('.')
- outfile = '%s/%s-%02d.%s' % (OUTPUT_DIR, sp[0], i, sp[-1])
-
- print("++INFO++")
- print(outfile)
- print("++INFO++")
-
-
- seq_det = seq.to_deterministic()
-
- print("===")
- print(INPUT_DIR)
- print(annotation['filename'])
- print("===")
-
- image = cv2.imread('%s/%s' % (INPUT_DIR, annotation['filename']))
- _bbs = []
- for obj in annotation['objects']:
- bb = ia.BoundingBox(x1=int(obj['xmin']),
- y1=int(obj['ymin']),
- x2=int(obj['xmax']),
- y2=int(obj['ymax']),
- label=obj['name'])
- _bbs.append(bb)
-
- bbs = ia.BoundingBoxesOnImage(_bbs, shape=image.shape)
-
- image_aug = seq_det.augment_images([image])[0]
- bbs_aug = seq_det.augment_bounding_boxes(
- [bbs])[0].remove_out_of_image().cut_out_of_image()
-
- writer = Writer(outfile,
- annotation['size']['width'],
- annotation['size']['height'])
- for bb in bbs_aug.bounding_boxes:
- if int((bb.x2-bb.x1)*(bb.y2-bb.y1)) == 0:
- print("augmentet boundingbox has non existing area. Skipping")
- continue
- writer.addObject(bb.label,
- int(bb.x1),
- int(bb.y1),
- int(bb.x2),
- int(bb.y2))
-
- print(outfile)
- cv2.imwrite(outfile, image_aug)
- writer.save('%s.xml' % outfile[:-4])
- # writer.save('%s.xml' % outfile.split('.')[0])
-
-
-if __name__ == '__main__':
- main()
diff --git a/Images/Annotated/augmented/049b1e2c-IMG_20191210_165339-00.jpg b/Images/Annotated/augmented/049b1e2c-IMG_20191210_165339-00.jpg
deleted file mode 100644
index a73310e15131b2647e2685ff96c72e92a38f0fe5..0000000000000000000000000000000000000000
Binary files a/Images/Annotated/augmented/049b1e2c-IMG_20191210_165339-00.jpg and /dev/null differ
diff --git a/Images/Annotated/augmented/049b1e2c-IMG_20191210_165339-00.xml b/Images/Annotated/augmented/049b1e2c-IMG_20191210_165339-00.xml
deleted file mode 100644
index 8a9c3f680b2f1bfa17193dfd6fe05f9f5a593d50..0000000000000000000000000000000000000000
--- a/Images/Annotated/augmented/049b1e2c-IMG_20191210_165339-00.xml
+++ /dev/null
@@ -1,939 +0,0 @@
-<annotation>
- <folder>augmented</folder>
- <filename>049b1e2c-IMG_20191210_165339-00.jpg</filename>
- <path>/home/dnth/Desktop/webdemos/webdemo-microalgae-detection/Images/Annotated/augmented/049b1e2c-IMG_20191210_165339-00.jpg</path>
- <source>
- <database>Unknown</database>
- </source>
- <size>
- <width>2794</width>
- <height>2793</height>
- <depth>3</depth>
- </size>
- <segmented>0</segmented>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>61</xmin>
- <ymin>0</ymin>
- <xmax>120</xmax>
- <ymax>36</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>22</xmin>
- <ymin>34</ymin>
- <xmax>104</xmax>
- <ymax>101</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>85</xmin>
- <ymin>119</ymin>
- <xmax>141</xmax>
- <ymax>175</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>3</xmin>
- <ymin>70</ymin>
- <xmax>36</xmax>
- <ymax>137</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>259</xmin>
- <ymin>116</ymin>
- <xmax>320</xmax>
- <ymax>194</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>313</xmin>
- <ymin>101</ymin>
- <xmax>355</xmax>
- <ymax>142</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>370</xmin>
- <ymin>152</ymin>
- <xmax>468</xmax>
- <ymax>194</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
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- <bndbox>
- <xmin>437</xmin>
- <ymin>193</ymin>
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- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
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- <bndbox>
- <xmin>368</xmin>
- <ymin>214</ymin>
- <xmax>444</xmax>
- <ymax>252</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
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- <bndbox>
- <xmin>505</xmin>
- <ymin>163</ymin>
- <xmax>568</xmax>
- <ymax>217</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
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- <xmin>462</xmin>
- <ymin>112</ymin>
- <xmax>508</xmax>
- <ymax>170</ymax>
- </bndbox>
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- </bndbox>
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- <xmin>572</xmin>
- <ymin>252</ymin>
- <xmax>617</xmax>
- <ymax>303</ymax>
- </bndbox>
- </object> <object>
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- <xmin>692</xmin>
- <ymin>265</ymin>
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- <ymax>320</ymax>
- </bndbox>
- </object> <object>
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- <ymin>228</ymin>
- <xmax>249</xmax>
- <ymax>269</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
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- <bndbox>
- <xmin>249</xmin>
- <ymin>228</ymin>
- <xmax>297</xmax>
- <ymax>298</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
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- <bndbox>
- <xmin>371</xmin>
- <ymin>274</ymin>
- <xmax>469</xmax>
- <ymax>329</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
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- <ymin>273</ymin>
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- <ymax>316</ymax>
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- <xmin>292</xmin>
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- </object> <object>
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- <bndbox>
- <xmin>79</xmin>
- <ymin>283</ymin>
- <xmax>174</xmax>
- <ymax>334</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
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- <bndbox>
- <xmin>182</xmin>
- <ymin>280</ymin>
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- <ymax>310</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
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- <difficult>0</difficult>
- <bndbox>
- <xmin>261</xmin>
- <ymin>295</ymin>
- <xmax>302</xmax>
- <ymax>327</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>160</xmin>
- <ymin>377</ymin>
- <xmax>234</xmax>
- <ymax>413</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
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- <bndbox>
- <xmin>96</xmin>
- <ymin>368</ymin>
- <xmax>156</xmax>
- <ymax>426</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
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- <bndbox>
- <xmin>50</xmin>
- <ymin>405</ymin>
- <xmax>84</xmax>
- <ymax>465</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
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- <bndbox>
- <xmin>0</xmin>
- <ymin>324</ymin>
- <xmax>69</xmax>
- <ymax>389</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
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- <bndbox>
- <xmin>56</xmin>
- <ymin>244</ymin>
- <xmax>82</xmax>
- <ymax>251</ymax>
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- </object> <object>
- <name>Microalgae</name>
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- <xmin>425</xmin>
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- <xmax>520</xmax>
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- </object> <object>
- <name>Microalgae</name>
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- <xmin>422</xmin>
- <ymin>7</ymin>
- <xmax>512</xmax>
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- </bndbox>
- </object> <object>
- <name>Microalgae</name>
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- <bndbox>
- <xmin>366</xmin>
- <ymin>63</ymin>
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- <ymax>100</ymax>
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- </object> <object>
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- <name>Microalgae</name>
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- <xmin>610</xmin>
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- <xmin>724</xmin>
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- <name>Microalgae</name>
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- <bndbox>
- <xmin>795</xmin>
- <ymin>160</ymin>
- <xmax>862</xmax>
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- </object> <object>
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- <bndbox>
- <xmin>759</xmin>
- <ymin>228</ymin>
- <xmax>859</xmax>
- <ymax>290</ymax>
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- </object> <object>
- <name>Microalgae</name>
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- <bndbox>
- <xmin>765</xmin>
- <ymin>254</ymin>
- <xmax>837</xmax>
- <ymax>312</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
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- <bndbox>
- <xmin>830</xmin>
- <ymin>356</ymin>
- <xmax>924</xmax>
- <ymax>401</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>750</xmin>
- <ymin>365</ymin>
- <xmax>827</xmax>
- <ymax>424</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>763</xmin>
- <ymin>77</ymin>
- <xmax>829</xmax>
- <ymax>145</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>789</xmin>
- <ymin>86</ymin>
- <xmax>845</xmax>
- <ymax>145</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>807</xmin>
- <ymin>71</ymin>
- <xmax>837</xmax>
- <ymax>100</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>775</xmin>
- <ymin>40</ymin>
- <xmax>794</xmax>
- <ymax>70</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>688</xmin>
- <ymin>552</ymin>
- <xmax>784</xmax>
- <ymax>607</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>805</xmin>
- <ymin>462</ymin>
- <xmax>904</xmax>
- <ymax>500</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>878</xmin>
- <ymin>473</ymin>
- <xmax>941</xmax>
- <ymax>522</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>713</xmin>
- <ymin>530</ymin>
- <xmax>829</xmax>
- <ymax>601</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>547</xmin>
- <ymin>691</ymin>
- <xmax>621</xmax>
- <ymax>769</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>453</xmin>
- <ymin>653</ymin>
- <xmax>554</xmax>
- <ymax>702</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>582</xmin>
- <ymin>653</ymin>
- <xmax>653</xmax>
- <ymax>697</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
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- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>74</xmin>
- <ymin>434</ymin>
- <xmax>138</xmax>
- <ymax>464</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>74</xmin>
- <ymin>400</ymin>
- <xmax>116</xmax>
- <ymax>450</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>35</xmin>
- <ymin>477</ymin>
- <xmax>109</xmax>
- <ymax>498</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>175</xmin>
- <ymin>390</ymin>
- <xmax>227</xmax>
- <ymax>493</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>507</xmin>
- <ymin>263</ymin>
- <xmax>545</xmax>
- <ymax>327</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>525</xmin>
- <ymin>291</ymin>
- <xmax>583</xmax>
- <ymax>326</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>464</xmin>
- <ymin>270</ymin>
- <xmax>514</xmax>
- <ymax>297</ymax>
- </bndbox>
- </object> <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>878</xmin>
- <ymin>216</ymin>
- <xmax>919</xmax>
- <ymax>231</ymax>
- </bndbox>
- </object>
-</annotation>
diff --git a/Images/Annotated/coco2voc.py b/Images/Annotated/coco2voc.py
deleted file mode 100644
index da96f132e30cac0e0276ff0fb7a663fe691bed85..0000000000000000000000000000000000000000
--- a/Images/Annotated/coco2voc.py
+++ /dev/null
@@ -1,101 +0,0 @@
-#encoding:utf-8
-
-import os
-import json
-import cv2
-from lxml import etree
-import xml.etree.cElementTree as ET
-import time
-import pandas as pd
-from tqdm import tqdm
-import json
-import argparse
-
-# Run this command
-# python coco2voc.py --json_path result.json
-
-# This creates xml file in the image directory as specified in the json file
-# images + json inside images folder
-# converted xml file also in images folder
-
-
-def coco2voc(anno, xml_dir, rgb_img):
-
- with open(anno, 'r', encoding='utf-8') as load_f:
- f = json.load(load_f)
-
-
- imgs = f['images']
-
- df_cate = pd.DataFrame(f['categories'])
- _ = df_cate.sort_values(["id"],ascending=True)
- df_anno = pd.DataFrame(f['annotations'])
- categories = dict(zip(df_cate.id.values, df_cate.name.values))
-
- for i in tqdm(range(len(imgs))):
- xml_content = []
- file_name = imgs[i]['file_name']
- height = imgs[i]['height']
- img_id = imgs[i]['id']
- width = imgs[i]['width']
-
- if(rgb_img == "True"): depth=3
- else: depth=1
-
- # print(depth)
-
- xml_content.append("<annotation>")
- xml_content.append(" <folder>VOC2007</folder>")
- xml_content.append(" <filename>"+file_name+"</filename>")
- xml_content.append(" <size>")
- xml_content.append(" <width>"+str(width)+"</width>")
- xml_content.append(" <height>"+str(height)+"</height>")
- xml_content.append(" <depth>"+str(depth)+"</depth>")
- xml_content.append(" </size>")
- xml_content.append(" <segmented>0</segmented>")
-
- annos = df_anno[df_anno["image_id"].isin([img_id])]
-
- for index, row in annos.iterrows():
- bbox = row["bbox"]
- category_id = row["category_id"]
- cate_name = categories[category_id]
-
-
- xml_content.append(" <object>")
- xml_content.append(" <name>"+cate_name+"</name>")
- xml_content.append(" <pose>Unspecified</pose>")
- xml_content.append(" <truncated>0</truncated>")
- xml_content.append(" <difficult>0</difficult>")
- xml_content.append(" <bndbox>")
- xml_content.append(" <xmin>"+str(int(bbox[0]))+"</xmin>")
- xml_content.append(" <ymin>"+str(int(bbox[1]))+"</ymin>")
- xml_content.append(" <xmax>"+str(int(bbox[0]+bbox[2]))+"</xmax>")
- xml_content.append(" <ymax>"+str(int(bbox[1]+bbox[3]))+"</ymax>")
- xml_content.append(" </bndbox>")
- xml_content.append(" </object>")
- xml_content.append("</annotation>")
-
- x = xml_content
- xml_content=[x[i] for i in range(0,len(x)) if x[i]!="\n"]
-
-
- xml_path = os.path.join(xml_dir,file_name.split('.')[-2] + '.xml')
-
- with open(xml_path, 'w+',encoding="utf8") as f:
- f.write('\n'.join(xml_content))
- xml_content[:]=[]
-
-
-if __name__ == '__main__':
- parser = argparse.ArgumentParser(description="convert coco .json annotation to voc .xml annotation")
-
- parser.add_argument('--json_path',type=str, help='path to json file.', default="./annotations/train.json")
- parser.add_argument('--rgb_img', type=str, help='True if image in rgb', default="True")
- parser.add_argument('--output',type = str, help='path to output xml files.',default="./images")
-
- args = parser.parse_args()
-
- if not os.path.exists(args.output):
- os.mkdir(args.output)
- coco2voc(args.json_path, args.output, args.rgb_img)
\ No newline at end of file
diff --git a/Images/Annotated/images/049b1e2c-IMG_20191210_165339.jpg b/Images/Annotated/images/049b1e2c-IMG_20191210_165339.jpg
deleted file mode 100644
index 17c5d2d3e5aea8ca7bb8c160528cefcb36fa5dbd..0000000000000000000000000000000000000000
Binary files a/Images/Annotated/images/049b1e2c-IMG_20191210_165339.jpg and /dev/null differ
diff --git a/Images/Annotated/images/049b1e2c-IMG_20191210_165339.xml b/Images/Annotated/images/049b1e2c-IMG_20191210_165339.xml
deleted file mode 100644
index 4a14d744eb4c116731687dbd61829ee75a41aeef..0000000000000000000000000000000000000000
--- a/Images/Annotated/images/049b1e2c-IMG_20191210_165339.xml
+++ /dev/null
@@ -1,1234 +0,0 @@
-<annotation>
- <folder>VOC2007</folder>
- <filename>049b1e2c-IMG_20191210_165339.jpg</filename>
- <size>
- <width>2794</width>
- <height>2793</height>
- <depth>3</depth>
- </size>
- <segmented>0</segmented>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>467</xmin>
- <ymin>523</ymin>
- <xmax>565</xmax>
- <ymax>763</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>409</xmin>
- <ymin>803</ymin>
- <xmax>578</xmax>
- <ymax>956</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>597</xmin>
- <ymin>1006</ymin>
- <xmax>707</xmax>
- <ymax>1144</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>391</xmin>
- <ymin>917</ymin>
- <xmax>434</xmax>
- <ymax>1110</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>215</xmin>
- <ymin>1089</ymin>
- <xmax>310</xmax>
- <ymax>1325</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1006</xmin>
- <ymin>874</ymin>
- <xmax>1116</xmax>
- <ymax>1080</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1105</xmin>
- <ymin>800</ymin>
- <xmax>1188</xmax>
- <ymax>901</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1256</xmin>
- <ymin>910</ymin>
- <xmax>1483</xmax>
- <ymax>971</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1450</xmin>
- <ymin>978</ymin>
- <xmax>1560</xmax>
- <ymax>1134</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1286</xmin>
- <ymin>1089</ymin>
- <xmax>1458</xmax>
- <ymax>1153</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1585</xmin>
- <ymin>846</ymin>
- <xmax>1714</xmax>
- <ymax>972</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1462</xmin>
- <ymin>726</ymin>
- <xmax>1545</xmax>
- <ymax>879</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1551</xmin>
- <ymin>830</ymin>
- <xmax>1646</xmax>
- <ymax>962</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1788</xmin>
- <ymin>1055</ymin>
- <xmax>1871</xmax>
- <ymax>1187</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>2072</xmin>
- <ymin>1012</ymin>
- <xmax>2155</xmax>
- <ymax>1153</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>825</xmin>
- <ymin>1271</ymin>
- <xmax>1018</xmax>
- <ymax>1338</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1043</xmin>
- <ymin>1206</ymin>
- <xmax>1123</xmax>
- <ymax>1393</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1333</xmin>
- <ymin>1258</ymin>
- <xmax>1551</xmax>
- <ymax>1362</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1403</xmin>
- <ymin>1234</ymin>
- <xmax>1578</xmax>
- <ymax>1314</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1166</xmin>
- <ymin>1320</ymin>
- <xmax>1289</xmax>
- <ymax>1495</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>665</xmin>
- <ymin>1486</ymin>
- <xmax>877</xmax>
- <ymax>1578</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>889</xmin>
- <ymin>1409</ymin>
- <xmax>1082</xmax>
- <ymax>1442</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1086</xmin>
- <ymin>1397</ymin>
- <xmax>1172</xmax>
- <ymax>1467</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>895</xmin>
- <ymin>1701</ymin>
- <xmax>1064</xmax>
- <ymax>1762</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>760</xmin>
- <ymin>1714</ymin>
- <xmax>876</xmax>
- <ymax>1858</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>677</xmin>
- <ymin>1852</ymin>
- <xmax>729</xmax>
- <ymax>2018</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>366</xmin>
- <ymin>2194</ymin>
- <xmax>544</xmax>
- <ymax>2307</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>421</xmin>
- <ymin>1905</ymin>
- <xmax>485</xmax>
- <ymax>2092</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>458</xmin>
- <ymin>1671</ymin>
- <xmax>658</xmax>
- <ymax>1809</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>326</xmin>
- <ymin>1661</ymin>
- <xmax>409</xmax>
- <ymax>1830</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>200</xmin>
- <ymin>1812</ymin>
- <xmax>387</xmax>
- <ymax>1855</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>147</xmin>
- <ymin>1865</ymin>
- <xmax>402</xmax>
- <ymax>1892</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>255</xmin>
- <ymin>1914</ymin>
- <xmax>396</xmax>
- <ymax>2077</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>83</xmin>
- <ymin>1609</ymin>
- <xmax>178</xmax>
- <ymax>1710</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>46</xmin>
- <ymin>1308</ymin>
- <xmax>224</xmax>
- <ymax>1412</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>575</xmin>
- <ymin>1394</ymin>
- <xmax>636</xmax>
- <ymax>1397</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>696</xmin>
- <ymin>321</ymin>
- <xmax>855</xmax>
- <ymax>468</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>582</xmin>
- <ymin>359</ymin>
- <xmax>775</xmax>
- <ymax>468</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>687</xmin>
- <ymin>220</ymin>
- <xmax>754</xmax>
- <ymax>358</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1015</xmin>
- <ymin>84</ymin>
- <xmax>1162</xmax>
- <ymax>268</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1246</xmin>
- <ymin>79</ymin>
- <xmax>1363</xmax>
- <ymax>165</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1070</xmin>
- <ymin>243</ymin>
- <xmax>1149</xmax>
- <ymax>442</ymax>
- </bndbox>
- </object>
- <object>
- <name>Microalgae</name>
- <pose>Unspecified</pose>
- <truncated>0</truncated>
- <difficult>0</difficult>
- <bndbox>
- <xmin>1289</xmin>
- <ymin>292</ymin>
- <xmax>1492</xmax>
- <ymax>437</ymax>
- </bndbox>
- </object>
- <object>
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\ No newline at end of file
diff --git a/Images/Annotated/images/result.json b/Images/Annotated/images/result.json
deleted file mode 100644
index 3e4f20893542e5cd1f4adfef2ceb52e4785f086d..0000000000000000000000000000000000000000
--- a/Images/Annotated/images/result.json
+++ /dev/null
@@ -1,18482 +0,0 @@
-{
- "images": [
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- "id": 0,
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- {
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- },
- {
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- {
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- },
- {
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- {
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- {
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- },
- {
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- {
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- {
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- },
- {
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- },
- {
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- "file_name": "1c9a0a9d-IMG_20191210_162402.jpg"
- },
- {
- "width": 2794,
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- "id": 16,
- "file_name": "3b3fd5eb-IMG_20191210_162238.jpg"
- }
- ],
- "categories": [
- {
- "id": 0,
- "name": "Microalgae"
- }
- ],
- "annotations": [
- {
- "id": 0,
- "image_id": 0,
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- "year": 2021,
- "version": "1.0",
- "description": "",
- "contributor": "Label Studio",
- "url": "",
- "date_created": "2021-12-01 09:43:34.990175"
- }
-}
\ No newline at end of file
diff --git a/Images/Annotated/util/__pycache__/annotation.cpython-38.pyc b/Images/Annotated/util/__pycache__/annotation.cpython-38.pyc
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index 8da5749c0040cb466b4360180854ca7ab70e9e2e..0000000000000000000000000000000000000000
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diff --git a/Images/Annotated/util/__pycache__/sequence_resize.cpython-38.pyc b/Images/Annotated/util/__pycache__/sequence_resize.cpython-38.pyc
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index a7b1d2d9f76d3724d6b01fe5505381868a35968f..0000000000000000000000000000000000000000
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diff --git a/Images/Annotated/util/__pycache__/sequence_simple.cpython-38.pyc b/Images/Annotated/util/__pycache__/sequence_simple.cpython-38.pyc
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index e7b37751edd087a8e40c654c3ff2837d0aab629f..0000000000000000000000000000000000000000
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diff --git a/Images/Annotated/util/annotation.py b/Images/Annotated/util/annotation.py
deleted file mode 100644
index 74e36f0e95790a35d308a1302ecdfcecdc69e17e..0000000000000000000000000000000000000000
--- a/Images/Annotated/util/annotation.py
+++ /dev/null
@@ -1,42 +0,0 @@
-import imgaug as ia
-from imgaug import augmenters as iaa
-import numpy as np
-import xml.etree.ElementTree as ET
-import glob
-import shutil
-
-EMPTY_DIR = 'empty'
-
-
-def parse_xml(filename):
- tree = ET.parse(filename)
- elem = tree.getroot()
- result = {
- 'filename': elem.find('.//filename').text,
- 'size': {
- 'width': elem.find('.//size/width').text,
- 'height': elem.find('.//size/height').text,
- 'depth': elem.find('.//size/depth').text,
- },
- 'objects': []
- }
-
- for e in elem.findall('.//object'):
- obj = {
- 'name': e.find('.//name').text,
- 'xmin': e.find('.//bndbox/xmin').text,
- 'ymin': e.find('.//bndbox/ymin').text,
- 'xmax': e.find('.//bndbox/xmax').text,
- 'ymax': e.find('.//bndbox/ymax').text
- }
- result['objects'].append(obj)
-
- return result
-
-
-def inspect(filename):
- annotation = parse_xml(filename)
-
- if len(annotation['objects']) == 0:
- print('Empty annotation file %s is moved.' % filename)
- shutil.move(filename, EMPTY_DIR)
diff --git a/Images/Annotated/util/sequence.py b/Images/Annotated/util/sequence.py
deleted file mode 100644
index 857e44019b0ae75cb17baf4930c471ef28db9c8f..0000000000000000000000000000000000000000
--- a/Images/Annotated/util/sequence.py
+++ /dev/null
@@ -1,98 +0,0 @@
-import imgaug as ia
-from imgaug import augmenters as iaa
-
-
-def get():
- def sometimes(aug): return iaa.Sometimes(0.5, aug)
-
- return iaa.Sequential(
- [
- # apply the following augmenters to most images
- iaa.Fliplr(0.5), # horizontally flip 50% of all images
- iaa.Flipud(0.2), # vertically flip 20% of all images
- # crop images by -5% to 10% of their height/width
- sometimes(iaa.CropAndPad(
- percent=(-0.05, 0.1),
- pad_mode=ia.ALL,
- pad_cval=(0, 255)
- )),
- sometimes(iaa.Affine(
- # scale images to 80-120% of their size, individually per axis
- scale={'x': (0.8, 1.2), 'y': (0.8, 1.2)},
- # translate by -20 to +20 percent (per axis)
- translate_percent={'x': (-0.2, 0.2), 'y': (-0.2, 0.2)},
- rotate=(-45, 45), # rotate by -45 to +45 degrees
- shear=(-16, 16), # shear by -16 to +16 degrees
- # use nearest neighbour or bilinear interpolation (fast)
- order=[0, 1],
- # if mode is constant, use a cval between 0 and 255
- cval=(0, 255),
- # use any of scikit-image's warping modes (see 2nd image from the top for examples)
- mode=ia.ALL
- )),
- # execute 0 to 5 of the following (less important) augmenters per image
- # don't execute all of them, as that would often be way too strong
- iaa.SomeOf((0, 5),
- [
- # convert images into their superpixel representation
- sometimes(iaa.Superpixels(
- p_replace=(0, 1.0), n_segments=(20, 200))),
- iaa.OneOf([
- # blur images with a sigma between 0 and 3.0
- iaa.GaussianBlur((0, 3.0)),
- # blur image using local means with kernel sizes between 2 and 7
- iaa.AverageBlur(k=(2, 7)),
- # blur image using local medians with kernel sizes between 2 and 7
- iaa.MedianBlur(k=(3, 11)),
- ]),
- iaa.Sharpen(alpha=(0, 1.0), lightness=(
- 0.75, 1.5)), # sharpen images
- iaa.Emboss(alpha=(0, 1.0), strength=(
- 0, 2.0)), # emboss images
- # search either for all edges or for directed edges,
- # blend the result with the original image using a blobby mask
- iaa.SimplexNoiseAlpha(iaa.OneOf([
- iaa.EdgeDetect(alpha=(0.5, 1.0)),
- iaa.DirectedEdgeDetect(
- alpha=(0.5, 1.0), direction=(0.0, 1.0)),
- ])),
- # add gaussian noise to images
- iaa.AdditiveGaussianNoise(loc=0, scale=(
- 0.0, 0.05*255), per_channel=0.5),
- iaa.OneOf([
- # randomly remove up to 10% of the pixels
- iaa.Dropout((0.01, 0.1), per_channel=0.5),
- iaa.CoarseDropout((0.03, 0.15), size_percent=(
- 0.02, 0.05), per_channel=0.2),
- ]),
- # invert color channels
- iaa.Invert(0.05, per_channel=True),
- # change brightness of images (by -10 to 10 of original value)
- iaa.Add((-10, 10), per_channel=0.5),
- # change hue and saturation
- iaa.AddToHueAndSaturation((-20, 20)),
- # either change the brightness of the whole image (sometimes
- # per channel) or change the brightness of subareas
- iaa.OneOf([
- iaa.Multiply((0.5, 1.5), per_channel=0.5),
- iaa.FrequencyNoiseAlpha(
- exponent=(-4, 0),
- first=iaa.Multiply((0.5, 1.5), per_channel=True),
- second=iaa.ContrastNormalization((0.5, 2.0))
- )
- ]),
- # improve or worsen the contrast
- iaa.ContrastNormalization((0.5, 2.0), per_channel=0.5),
- iaa.Grayscale(alpha=(0.0, 1.0)),
- # move pixels locally around (with random strengths)
- sometimes(iaa.ElasticTransformation(
- alpha=(0.5, 3.5), sigma=0.25)),
- # sometimes move parts of the image around
- sometimes(iaa.PiecewiseAffine(scale=(0.01, 0.05))),
- sometimes(iaa.PerspectiveTransform(scale=(0.01, 0.1)))
- ],
- random_order=True
- )
- ],
- random_order=False
- )
diff --git a/Images/Annotated/util/sequence_resize.py b/Images/Annotated/util/sequence_resize.py
deleted file mode 100644
index 46ebd8d501c4a43587d6807b54e140ee2bfaf46f..0000000000000000000000000000000000000000
--- a/Images/Annotated/util/sequence_resize.py
+++ /dev/null
@@ -1,33 +0,0 @@
-import imgaug as ia
-from imgaug import augmenters as iaa
-
-
-def get():
- def sometimes(aug): return iaa.Sometimes(0.5, aug)
-
- return iaa.Sequential(
- [
- iaa.PadToSquare(position='center'),
- # iaa.Fliplr(0.5), # horizontal flips
-
- # sometimes(iaa.Multiply((0.8, 1.2), per_channel=0.2),),
- # sometimes(iaa.Add((-10, 10), per_channel=0.5)), # change brightness of images (by -10 to 10 of original value)
- # sometimes(iaa.AddToHueAndSaturation((-20, 20))), # change hue and saturation
-
- sometimes(iaa.AddToBrightness((-30, 30))),
- sometimes(iaa.LinearContrast((0.75, 1.5))), # Strengthen or weaken the contrast in each image.
-
- sometimes(iaa.CropAndPad(
- percent=(-0.05, 0.1),
- pad_mode=ia.ALL,
- pad_cval=(0, 255)
- )),
- sometimes(iaa.Affine(
- scale={"x": (0.8, 1.2), "y": (0.8, 1.2)},
- translate_percent={"x": (-0.2, 0.2), "y": (-0.2, 0.2)},
- rotate=(-15, 15)
- )),
- iaa.Resize({"height": 1024, "width": 1024})
- ],
- random_order=False
- )
diff --git a/Images/Annotated/util/sequence_simple.py b/Images/Annotated/util/sequence_simple.py
deleted file mode 100644
index 61741eec038c719b059b4b943716a13f9e963546..0000000000000000000000000000000000000000
--- a/Images/Annotated/util/sequence_simple.py
+++ /dev/null
@@ -1,46 +0,0 @@
-import imgaug as ia
-from imgaug import augmenters as iaa
-
-
-def get():
- def sometimes(aug): return iaa.Sometimes(0.5, aug)
-
- return iaa.Sequential(
- [
- iaa.CropAndPad(
- percent=(-0.1, 0.1),
- pad_mode=ia.ALL,
- pad_cval=(0, 255),
- ),
- iaa.Fliplr(0.5), # horizontal flips
- iaa.Crop(percent=(0, 0.1)), # random crops
- # Small gaussian blur with random sigma between 0 and 0.5.
- # But we only blur about 50% of all images.
- iaa.Sometimes(
- 0.5,
- iaa.GaussianBlur(sigma=(0, 0.5))
- ),
- # Strengthen or weaken the contrast in each image.
- iaa.LinearContrast((0.75, 1.5)),
- # Add gaussian noise.
- # For 50% of all images, we sample the noise once per pixel.
- # For the other 50% of all images, we sample the noise per pixel AND
- # channel. This can change the color (not only brightness) of the
- # pixels.
- # iaa.AdditiveGaussianNoise(loc=0, scale=(
- # 0.0, 0.05*255), per_channel=0.5),
- # Make some images brighter and some darker.
- # In 20% of all cases, we sample the multiplier once per channel,
- # which can end up changing the color of the images.
- # iaa.Multiply((0.8, 1.2), per_channel=0.2),
- # Apply affine transformations to each image.
- # Scale/zoom them, translate/move them, rotate them and shear them.
- iaa.Affine(
- scale={"x": (0.8, 1.2), "y": (0.8, 1.2)},
- translate_percent={"x": (-0.2, 0.2), "y": (-0.2, 0.2)},
- rotate=(-25, 25),
- shear=(-8, 8)
- )
- ],
- random_order=False
- )
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diff --git a/app.py b/app.py
index e7b12c7078b5a4aba93de3a1518aeaac33ab28fe..4ae3082167063298c5cf9e634498a95b75fb2f23 100644
--- a/app.py
+++ b/app.py
@@ -1,42 +1,22 @@
from icevision.all import *
-import PIL, requests
-import torch
-from torchvision import transforms
+from icevision.models.checkpoint import *
+import PIL
import gradio as gr
+import os
-# Download the dataset
-# Create the parser
-parser = parsers.VOCBBoxParser(annotations_dir="Images/Annotated/augmented", images_dir="Images/Annotated/augmented")
-
-
-# Parse annotations to create records
-train_records, valid_records = parser.parse()
-
-class_map = parser.class_map
+# Load model
+checkpoint_path = 'models/model_checkpoint.pth'
+checkpoint_and_model = model_from_checkpoint(checkpoint_path)
-extra_args = {}
-model_type = models.torchvision.retinanet
-backbone = model_type.backbones.resnet50_fpn
-# Instantiate the model
-model = model_type.model(backbone=backbone(pretrained=True), num_classes=len(parser.class_map), **extra_args)
+model = checkpoint_and_model["model"]
+model_type = checkpoint_and_model["model_type"]
+class_map = checkpoint_and_model["class_map"]
# Transforms
-# size is set to 384 because EfficientDet requires its inputs to be divisible by 128
-image_size = 640
-train_tfms = tfms.A.Adapter([*tfms.A.aug_tfms(size=image_size, presize=768), tfms.A.Normalize()])
-valid_tfms = tfms.A.Adapter([*tfms.A.resize_and_pad(image_size), tfms.A.Normalize()])
-# Datasets
-train_ds = Dataset(train_records, train_tfms)
-valid_ds = Dataset(valid_records, valid_tfms)
-# Data Loaders
-train_dl = model_type.train_dl(train_ds, batch_size=8, num_workers=4, shuffle=True)
-valid_dl = model_type.valid_dl(valid_ds, batch_size=8, num_workers=4, shuffle=False)
-metrics = [COCOMetric(metric_type=COCOMetricType.bbox)]
-learn = model_type.fastai.learner(dls=[train_dl, valid_dl], model=model, metrics=metrics)
-
-learn = learn.load('model')
+img_size = checkpoint_and_model["img_size"]
+valid_tfms = tfms.A.Adapter([*tfms.A.resize_and_pad(img_size), tfms.A.Normalize()])
+
-import os
for root, dirs, files in os.walk(r'sample_images/'):
for filename in files:
print(filename)
diff --git a/models/model.pth b/models/model.pth
deleted file mode 100644
index 890accac0dfec13e42b5aef61e160bed06c15459..0000000000000000000000000000000000000000
--- a/models/model.pth
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:420fae346d82ce0cf47755c1911a3d8d446b36e2fd276eb8e316344f5110abb0
-size 129206631
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