up

app.R

@@ -4,7 +4,7 @@
 
 # shiny::runApp("./")
 # Setup
-rtemisseq_version <- "0.2.6"
+rtemisseq_version <- "0.2.7"
 library(rtemis)
 library(rtemisbio)
 library(shiny)
@@ -16,7 +16,7 @@ source("data.R")
 
 # Colors
 primary <- "#72CDF4"
-info <- helpcol <- "#FEB2E0"
+info <- helpcol <- "#B43880"
 success <- "#B4DC55"
 
 #' Create protein visualization shinylive app
@@ -117,9 +117,10 @@ seqvizlive <- function(
         title = "Welcome",
         icon = bsicons::bs_icon("stars"),
         bslib::card(
-          h4("Welcome to rtemisSeq", style = "text-align: center;"),
           card_body(
             class = "d-inline text-center",
+            h4("Welcome to rtemisSeq", style = "text-align: center;"),
+            br(),
             HTML(paste0(
               "rtemisSeq is a web interface for ",
               as.character(a("rtemisbio", href = "https://rtemis.org/rtemisbio", target = "_blank")),
@@ -135,15 +136,15 @@ seqvizlive <- function(
             br(), br(),
             bslib::card_image(
               file = "./www/rtemisseq-splash.webp",
-              alt = "rtemislive",
+              alt = "rtemisseq",
               align = "center",
               border_radius = "all",
               fill = FALSE,
               width = "40%",
               class = "mx-auto"
-            )
-          )
-        )
+            ) # /card_image
+          ) # /card_body
+        ) # /card
       ), # /nav_panel Welcome
       ## [] Protein Visualization ----
       bslib::nav_panel(
@@ -210,40 +211,44 @@ seqvizlive <- function(
         title = "About",
         icon = bsicons::bs_icon("info-square"),
         bslib::card(
-          card_image(
-            file = "./www/rtemisbio_s.webp",
-            href = "https://rtemis.org/rtemisbio",
-            alt = "rtemislive",
-            align = "center",
-            border_radius = "all",
-            fill = FALSE,
-            width = "54%",
-            class = "mx-auto"
-          ),
-          div(
-            class = "d-inline text-center",
-            HTML(paste0(
-              "Created by the ",
-              as.character(a("FTD CWOW", href = "https://cwow.ucsf.edu/", target = "_blank")),
-              " Genomics & Transcriptomics core.<br/>",
-              "Powered by rtemis & rtemisbio (",
-              as.character(a("rtemis.org", href = "https://rtemis.org", target = "_blank")),
-              ")."
-            )),
-            br(), br(),
-            a(
-              img(
-                src = "rtemis_gray.png",
-                alt = "rtemis",
-                align = "center",
-                width = "190px"
-              ),
-              href = "https://rtemis.org",
-              target = "_blank"
+          class = "mx-auto",
+          bslib::card_body(
+            div(
+              class = "text-center",
+              HTML(paste0(
+                "Created by the ",
+                as.character(a("FTD CWOW", href = "https://cwow.ucsf.edu/", target = "_blank")),
+                " Genomics & Transcriptomics core.<br/>",
+                "Powered by rtemis & rtemisbio (",
+                as.character(a("rtemis.org", href = "https://rtemis.org", target = "_blank")),
+                ")."
+              ))
+            ), # /div
+            card_image(
+              file = "./www/rtemisbio.webp",
+              href = "https://rtemis.org/rtemisbio",
+              alt = "rtemisbio",
+              align = "center",
+              border_radius = "all",
+              fill = FALSE,
+              width = "54%",
+              class = "mx-auto"
             ),
-            align = "center"
-          )
-        )
+            div(
+              class = "text-center",
+              a(
+                img(
+                  src = "rtemis_gray.png",
+                  alt = "rtemis",
+                  # align = "center",
+                  width = "190px"
+                ),
+                href = "https://rtemis.org",
+                target = "_blank"
+              )
+            ) # /div
+          ) # /card_body
+        ) # /card
       ), # /nav_panel About
       bslib::nav_spacer(),
       bslib::nav_item(input_dark_mode(id = "dark_mode", mode = default_theme)),
@@ -316,13 +321,6 @@ seqvizlive <- function(
       bslib::card(
         bslib::card_title("a3 Dataset Info", container = htmltools::h6),
         bslib::card_body(
-          # HTML("Sequence length:", paste0("<b>", length(a3_obj()$Sequence), "</b>")),
-          # if (length(a3_obj()$UniprotID) > 0) {
-          #   HTML("Uniprot ID:", paste0("<b>", a3_obj()$UniprotID, "</b>"))
-          # },
-          # if (length(a3_obj()$Reference) > 0) {
-          #   a("Reference", href = a3_obj()$Reference, target = "_blank")
-          # },
           summarize_a3(a3_obj()),
           fillable = FALSE
         ) # /card_body