bugs: fix path refernces and folder permissions

Dockerfile

@@ -23,16 +23,11 @@ RUN sed -i "s|port=8050|port=7860 |g" ./MetaExtractor/src/data_review_tool/app.p
     && sed -i "s|logger.addHandler(get_file_handler())|#logger.addHandler(get_file_handler())|g" ./MetaExtractor/src/logs.py \
     && sed -i 's|/entity_extraction|./entity_extraction|g' ./MetaExtractor/src/data_review_tool/app.py \
     && sed -i 's|/entity_extraction|./entity_extraction|g' ./MetaExtractor/src/data_review_tool/pages/home.py \
-    && sed -i 's|/entity_extraction|./entity_extraction|g' ./MetaExtractor/src/data_review_tool/pages/article_review.py \
-    && sed -i "s|/MetaExtractor/inputs/|./inputs/|g" ./MetaExtractor/src/data_review_tool/app.py 
-    #&& sed -i 's|debug=True|debug=False|g' ./MetaExtractor/src/data_review_tool/app.py 
-
-# change ownership of the app folder to user & enable read/write/exectue permissions
-RUN chown -R root:user ./MetaExtractor/ \
-    && chmod -R 775 ./MetaExtractor/
-
-# Copy the requirements.txt file to the working directory
-# COPY ./requirements.txt .
+    && sed -i 's|/MetaExtractor|.|g' ./MetaExtractor/src/data_review_tool/pages/home.py \
+    && sed -i 's|/MetaExtractor|.|g' ./MetaExtractor/src/data_review_tool/pages/article_review.py \
+    && sed -i 's|/entity_extraction|/home/user/app/MetaExtractor/entity_extraction|g' ./MetaExtractor/src/data_review_tool/pages/article_review.py \
+    && sed -i "s|/MetaExtractor/inputs/|./inputs/|g" ./MetaExtractor/src/data_review_tool/app.py \
+    && sed -i 's|debug=True|debug=False|g' ./MetaExtractor/src/data_review_tool/app.py 
 
 # Install the Python dependencies, removed --no-cache-dir
 RUN pip install -r MetaExtractor/docker/data-review-tool/requirements.txt
@@ -55,6 +50,10 @@ ENV ENTITY_EXTRACTION_BATCH=entity-extraction-output.zip
 RUN cp ./data/data-review-tool/article-relevance-output.parquet ./inputs \
     && cp ./data/data-review-tool/entity-extraction-output.zip ./inputs
 
+# change ownership of the app folder to user & enable read/write/exectue permissions
+RUN chown -R root:user ../MetaExtractor/ \
+    && chmod -R 775 ../MetaExtractor/
+
 # switch to user to run the scripts
 USER user