Spaces:
Sleeping
Sleeping
Create app.py
Browse files
app.py
ADDED
@@ -0,0 +1,221 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
import os
|
2 |
+
os.environ["CUDA_VISIBLE_DEVICES"] = "-1" # Force TensorFlow to use CPU
|
3 |
+
|
4 |
+
import gradio as gr
|
5 |
+
import numpy as np
|
6 |
+
from PIL import Image
|
7 |
+
from reportlab.lib.pagesizes import letter
|
8 |
+
from reportlab.pdfgen import canvas
|
9 |
+
from reportlab.lib import colors
|
10 |
+
from reportlab.platypus import Table, TableStyle
|
11 |
+
import requests
|
12 |
+
import smtplib
|
13 |
+
from email.mime.multipart import MIMEMultipart
|
14 |
+
from email.mime.text import MIMEText
|
15 |
+
from email.mime.base import MIMEBase
|
16 |
+
from email import encoders
|
17 |
+
import io
|
18 |
+
import base64
|
19 |
+
|
20 |
+
# FastAPI server URL
|
21 |
+
FASTAPI_URL = "http://localhost:7860/analyze" # Adjust if your FastAPI server is running elsewhere
|
22 |
+
|
23 |
+
# Email credentials
|
24 |
+
SENDER_EMAIL = "[email protected]"
|
25 |
+
SENDER_PASSWORD = "1w3r5y7i9pW$"
|
26 |
+
|
27 |
+
# Read HTML content from `re.html`
|
28 |
+
with open("templates/re.html", "r", encoding="utf-8") as file:
|
29 |
+
html_content = file.read()
|
30 |
+
|
31 |
+
# List of sample images
|
32 |
+
sample_images = [f"samples/{img}" for img in os.listdir("samples") if img.endswith((".png", ".jpg", ".jpeg"))]
|
33 |
+
|
34 |
+
def image_to_base64(image_path):
|
35 |
+
with open(image_path, "rb") as image_file:
|
36 |
+
return base64.b64encode(image_file.read()).decode('utf-8')
|
37 |
+
|
38 |
+
# Function to process X-ray and generate a PDF report
|
39 |
+
def generate_report(name, age, gender, weight, height, allergies, cause, xray, email):
|
40 |
+
image_size = (224, 224)
|
41 |
+
|
42 |
+
# Send X-ray to FastAPI for analysis
|
43 |
+
try:
|
44 |
+
with open(xray, 'rb') as f:
|
45 |
+
files = {'file': (os.path.basename(xray), f)}
|
46 |
+
response = requests.post(FASTAPI_URL, files=files)
|
47 |
+
response.raise_for_status() # Raise an exception for bad status codes
|
48 |
+
fastapi_results_html = response.text
|
49 |
+
except requests.exceptions.RequestException as e:
|
50 |
+
return f"Error connecting to FastAPI server: {e}"
|
51 |
+
|
52 |
+
# Extract prediction from FastAPI response (you might need to adjust this based on the exact HTML structure)
|
53 |
+
diagnosed_class = "normal"
|
54 |
+
severity = "Not Available"
|
55 |
+
try:
|
56 |
+
# Simple string matching for now - improve this if the HTML structure is complex
|
57 |
+
if "KnochenWächter" in fastapi_results_html:
|
58 |
+
if "Kein Knochenbruch" in fastapi_results_html:
|
59 |
+
diagnosed_class = "normal"
|
60 |
+
elif "Knochenbruch" in fastapi_results_html or "Auffällig" in fastapi_results_html:
|
61 |
+
diagnosed_class = "Fractured"
|
62 |
+
|
63 |
+
if diagnosed_class == "Fractured":
|
64 |
+
if "score-high" in fastapi_results_html:
|
65 |
+
severity = "Severe"
|
66 |
+
elif "score-medium" in fastapi_results_html:
|
67 |
+
severity = "Moderate"
|
68 |
+
else:
|
69 |
+
severity = "Mild"
|
70 |
+
else:
|
71 |
+
severity = "Mild" # Assuming normal is mild
|
72 |
+
except Exception as e:
|
73 |
+
print(f"Error parsing FastAPI response: {e}")
|
74 |
+
|
75 |
+
# Treatment details table
|
76 |
+
treatment_data = [
|
77 |
+
["Severity Level", "Recommended Treatment", "Recovery Duration"],
|
78 |
+
["Mild", "Rest, pain relievers, and follow-up X-ray", "4-6 weeks"],
|
79 |
+
["Moderate", "Plaster cast, minor surgery if needed", "6-10 weeks"],
|
80 |
+
["Severe", "Major surgery, metal implants, physiotherapy", "Several months"]
|
81 |
+
]
|
82 |
+
|
83 |
+
# Estimated cost & duration table
|
84 |
+
cost_duration_data = [
|
85 |
+
["Hospital Type", "Estimated Cost", "Recovery Time"],
|
86 |
+
["Government Hospital", f"₹{2000 if severity == 'Mild' else 8000 if severity == 'Moderate' else 20000} - ₹{5000 if severity == 'Mild' else 15000 if severity == 'Moderate' else 50000}", "4-12 weeks"],
|
87 |
+
["Private Hospital", f"₹{10000 if severity == 'Mild' else 30000 if severity == 'Moderate' else 100000}+", "6 weeks - Several months"]
|
88 |
+
]
|
89 |
+
|
90 |
+
# Save X-ray image for report
|
91 |
+
img = Image.open(xray).resize((300, 300))
|
92 |
+
img_path = f"{name}_xray.png"
|
93 |
+
img.save(img_path)
|
94 |
+
|
95 |
+
# Generate PDF report
|
96 |
+
report_path = f"{name}_fracture_report.pdf"
|
97 |
+
c = canvas.Canvas(report_path, pagesize=letter)
|
98 |
+
|
99 |
+
# Report title
|
100 |
+
c.setFont("Helvetica-Bold", 16)
|
101 |
+
c.drawString(200, 770, "Bone Fracture Detection Report")
|
102 |
+
|
103 |
+
# Patient details table
|
104 |
+
patient_data = [
|
105 |
+
["Patient Name", name],
|
106 |
+
["Age", age],
|
107 |
+
["Gender", gender],
|
108 |
+
["Weight", f"{weight} kg"],
|
109 |
+
["Height", f"{height} cm"],
|
110 |
+
["Allergies", allergies if allergies else "None"],
|
111 |
+
["Cause of Injury", cause if cause else "Not Provided"],
|
112 |
+
["Diagnosis", diagnosed_class],
|
113 |
+
["Injury Severity", severity]
|
114 |
+
]
|
115 |
+
|
116 |
+
# Format and align tables
|
117 |
+
def format_table(data):
|
118 |
+
table = Table(data, colWidths=[270, 270]) # Set 90% width
|
119 |
+
table.setStyle(TableStyle([
|
120 |
+
('BACKGROUND', (0, 0), (-1, 0), colors.darkblue),
|
121 |
+
('TEXTCOLOR', (0, 0), (-1, 0), colors.whitesmoke),
|
122 |
+
('ALIGN', (0, 0), (-1, -1), 'CENTER'),
|
123 |
+
('FONTNAME', (0, 0), (-1, 0), 'Helvetica-Bold'),
|
124 |
+
('BOTTOMPADDING', (0, 0), (-1, 0), 12),
|
125 |
+
('GRID', (0, 0), (-1, -1), 1, colors.black),
|
126 |
+
('VALIGN', (0, 0), (-1, -1), 'MIDDLE')
|
127 |
+
]))
|
128 |
+
return table
|
129 |
+
|
130 |
+
# Draw patient details table
|
131 |
+
patient_table = format_table(patient_data)
|
132 |
+
patient_table.wrapOn(c, 480, 500)
|
133 |
+
patient_table.drawOn(c, 50, 620)
|
134 |
+
|
135 |
+
# Load and insert X-ray image
|
136 |
+
c.drawInlineImage(img_path, 50, 320, width=250, height=250)
|
137 |
+
c.setFont("Helvetica-Bold", 12)
|
138 |
+
c.drawString(120, 290, f"Fractured: {'Yes' if diagnosed_class == 'Fractured' else 'No'}")
|
139 |
+
|
140 |
+
# Draw treatment and cost tables
|
141 |
+
treatment_table = format_table(treatment_data)
|
142 |
+
treatment_table.wrapOn(c, 480, 200)
|
143 |
+
treatment_table.drawOn(c, 50, 200)
|
144 |
+
|
145 |
+
cost_table = format_table(cost_duration_data)
|
146 |
+
cost_table.wrapOn(c, 480, 150)
|
147 |
+
cost_table.drawOn(c, 50, 80)
|
148 |
+
|
149 |
+
c.save()
|
150 |
+
|
151 |
+
# Send email with the report
|
152 |
+
subject = "Bone Fracture Detection Report"
|
153 |
+
body = f"Dear {name},\n\nPlease find attached your bone fracture detection report.\n\nSincerely,\nYour Bone Fracture Detection System"
|
154 |
+
|
155 |
+
msg = MIMEMultipart()
|
156 |
+
msg['From'] = SENDER_EMAIL
|
157 |
+
msg['To'] = email
|
158 |
+
msg['Subject'] = subject
|
159 |
+
msg.attach(MIMEText(body))
|
160 |
+
|
161 |
+
with open(report_path, "rb") as attachment:
|
162 |
+
part = MIMEBase('application', "octet-stream")
|
163 |
+
part.set_payload(attachment.read())
|
164 |
+
|
165 |
+
encoders.encode_base64(part)
|
166 |
+
part.add_header('Content-Disposition', f"attachment; filename= {os.path.basename(report_path)}")
|
167 |
+
msg.attach(part)
|
168 |
+
|
169 |
+
try:
|
170 |
+
with smtplib.SMTP_SSL('smtp.gmail.com', 465) as server:
|
171 |
+
server.login(SENDER_EMAIL, SENDER_PASSWORD)
|
172 |
+
server.sendmail(SENDER_EMAIL, email, msg.as_string())
|
173 |
+
print(f"Report sent successfully to {email}")
|
174 |
+
return report_path # Return path for auto-download
|
175 |
+
except Exception as e:
|
176 |
+
return f"Error sending email: {e}"
|
177 |
+
|
178 |
+
# Function to select a sample image
|
179 |
+
def use_sample_image(sample_image_path):
|
180 |
+
return sample_image_path # Returns selected sample image filepath
|
181 |
+
|
182 |
+
# Define Gradio Interface
|
183 |
+
with gr.Blocks() as app:
|
184 |
+
gr.HTML(html_content) # Display `re.html` content in Gradio
|
185 |
+
gr.Markdown("## Bone Fracture Detection System")
|
186 |
+
|
187 |
+
with gr.Row():
|
188 |
+
name = gr.Textbox(label="Patient Name")
|
189 |
+
age = gr.Number(label="Age")
|
190 |
+
gender = gr.Radio(["Male", "Female", "Other"], label="Gender")
|
191 |
+
|
192 |
+
with gr.Row():
|
193 |
+
weight = gr.Number(label="Weight (kg)")
|
194 |
+
height = gr.Number(label="Height (cm)")
|
195 |
+
|
196 |
+
with gr.Row():
|
197 |
+
allergies = gr.Textbox(label="Allergies (if any)")
|
198 |
+
cause = gr.Textbox(label="Cause of Injury")
|
199 |
+
|
200 |
+
with gr.Row():
|
201 |
+
xray = gr.Image(type="filepath", label="Upload X-ray Image")
|
202 |
+
|
203 |
+
with gr.Row():
|
204 |
+
sample_selector = gr.Dropdown(choices=sample_images, label="Use Sample Image")
|
205 |
+
select_button = gr.Button("Load Sample Image")
|
206 |
+
|
207 |
+
email = gr.Textbox(label="Patient Email Address")
|
208 |
+
submit_button = gr.Button("Generate Report and Send Email")
|
209 |
+
output_file = gr.File(label="Download Report")
|
210 |
+
|
211 |
+
select_button.click(use_sample_image, inputs=[sample_selector], outputs=[xray])
|
212 |
+
|
213 |
+
submit_button.click(
|
214 |
+
generate_report,
|
215 |
+
inputs=[name, age, gender, weight, height, allergies, cause, xray, email],
|
216 |
+
outputs=[output_file],
|
217 |
+
)
|
218 |
+
|
219 |
+
# Launch the Gradio app
|
220 |
+
if __name__ == "__main__":
|
221 |
+
app.launch()
|