Update app.py

app.py

@@ -565,11 +565,24 @@ def create_interface():
             - GC content is calculated using a sliding window
             """)
         
-        # Connect components
+                    # Connect components
         sequence_state = gr.State()
         
+        def process_and_update(file_obj, fasta_text, window_size, top_kmers):
+            """Wrapper to handle plot outputs correctly"""
+            results, plots, analysis = process_sequence(file_obj, fasta_text, window_size, top_kmers)
+            if plots:
+                return [
+                    results,
+                    plots[0],  # genome plot
+                    plots[1],  # kmer plot
+                    plots[2],  # distribution plot
+                    analysis
+                ]
+            return [results, None, None, None, None]
+        
         analyze_btn.click(
-            process_sequence,
+            process_and_update,
             inputs=[
                 file_input,
                 text_input,
@@ -578,7 +591,9 @@ def create_interface():
             ],
             outputs=[
                 results_text,
-                [genome_plot, kmer_plot, dist_plot],
+                genome_plot,
+                kmer_plot,
+                dist_plot,
                 sequence_state
             ]
         )