Update app.py

app.py

@@ -603,26 +603,29 @@ def analyze_sequence_comparison(file1, file2, fasta1="", fasta2=""):
     frac_different = np.mean(substantial_diffs)
     
     # Generate comparison text
-    comparison_text = f"""Sequence Comparison Results:
-Sequence 1: {results1[4]}
-Length: {len(shap1):,} bases
-Classification: {results1[0].split('Classification: ')[1].split('\n')[0]}
-
-Sequence 2: {results2[4]}
-Length: {len(shap2):,} bases
-Classification: {results2[0].split('Classification: ')[1].split('\n')[0]}
-
-Comparison Statistics:
-Average SHAP difference: {avg_diff:.4f}
-Standard deviation: {std_diff:.4f}
-Max difference: {max_diff:.4f} (Seq2 more human-like)
-Min difference: {min_diff:.4f} (Seq1 more human-like)
-Fraction of positions with substantial differences: {frac_different:.2%}
-
-Interpretation:
-Positive values (red) indicate regions where Sequence 2 is more "human-like"
-Negative values (blue) indicate regions where Sequence 1 is more "human-like"
-"""
+    # Format the numbers without using f-string with `:,`
+    len1_formatted = "{:,}".format(len(shap1))
+    len2_formatted = "{:,}".format(len(shap2))
+    frac_formatted = "{:.2%}".format(frac_different)
+    
+    comparison_text = (
+        f"Sequence Comparison Results:\n"
+        f"Sequence 1: {results1[4]}\n"
+        f"Length: {len1_formatted} bases\n"
+        f"Classification: {results1[0].split('Classification: ')[1].split('\\n')[0]}\n\n"
+        f"Sequence 2: {results2[4]}\n"
+        f"Length: {len2_formatted} bases\n"
+        f"Classification: {results2[0].split('Classification: ')[1].split('\\n')[0]}\n\n"
+        f"Comparison Statistics:\n"
+        f"Average SHAP difference: {avg_diff:.4f}\n"
+        f"Standard deviation: {std_diff:.4f}\n"
+        f"Max difference: {max_diff:.4f} (Seq2 more human-like)\n"
+        f"Min difference: {min_diff:.4f} (Seq1 more human-like)\n"
+        f"Fraction of positions with substantial differences: {frac_formatted}\n\n"
+        f"Interpretation:\n"
+        f"Positive values (red) indicate regions where Sequence 2 is more 'human-like'\n"
+        f"Negative values (blue) indicate regions where Sequence 1 is more 'human-like'"
+    )
     
     # Create comparison heatmap
     heatmap_fig = plot_comparative_heatmap(shap_diff)
@@ -636,7 +639,7 @@ Negative values (blue) indicate regions where Sequence 1 is more "human-like"
     hist_img = fig_to_image(hist_fig)
     
     return comparison_text, heatmap_img, hist_img
-
+    
 ###############################################################################
 # 9. BUILD GRADIO INTERFACE
 ###############################################################################