hlnicholls commited on
Commit
58ec90d
·
1 Parent(s): c0dc994

Update app.py

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Files changed (1) hide show
  1. app.py +2 -1
app.py CHANGED
@@ -108,9 +108,10 @@ if len(gene_list) > 1:
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  )
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  df_shap = df_total[df_total.index.isin(gene_list)]
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  df_shap.drop(columns='XGB_Score', inplace=True)
 
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  shap_values = explainer.shap_values(df_shap)
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  #summary_plot = shap.summary_plot(shap_values, df_shap)
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- summary_plot = shap_summary_plot(shap_values,features=df_shap, feature_names=df_shap.columns, max_display=8)
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  st.pyplot(fig=summary_plot)
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  st.caption("SHAP Summary Plot of All Input Genes")
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  feature_order = np.argsort(np.sum(np.abs(shap_values), axis=0)[:-1])
 
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  )
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  df_shap = df_total[df_total.index.isin(gene_list)]
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  df_shap.drop(columns='XGB_Score', inplace=True)
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+ print(df_shap.columns)
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  shap_values = explainer.shap_values(df_shap)
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  #summary_plot = shap.summary_plot(shap_values, df_shap)
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+ summary_plot = shap_summary_plot(shap_values, features=df_shap, feature_names=df_shap.columns, max_display=8)
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  st.pyplot(fig=summary_plot)
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  st.caption("SHAP Summary Plot of All Input Genes")
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  feature_order = np.argsort(np.sum(np.abs(shap_values), axis=0)[:-1])