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58ec90d
1
Parent(s):
c0dc994
Update app.py
Browse files
app.py
CHANGED
@@ -108,9 +108,10 @@ if len(gene_list) > 1:
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)
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df_shap = df_total[df_total.index.isin(gene_list)]
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df_shap.drop(columns='XGB_Score', inplace=True)
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shap_values = explainer.shap_values(df_shap)
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#summary_plot = shap.summary_plot(shap_values, df_shap)
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summary_plot = shap_summary_plot(shap_values,features=df_shap, feature_names=df_shap.columns, max_display=8)
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st.pyplot(fig=summary_plot)
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st.caption("SHAP Summary Plot of All Input Genes")
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feature_order = np.argsort(np.sum(np.abs(shap_values), axis=0)[:-1])
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)
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df_shap = df_total[df_total.index.isin(gene_list)]
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df_shap.drop(columns='XGB_Score', inplace=True)
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print(df_shap.columns)
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shap_values = explainer.shap_values(df_shap)
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#summary_plot = shap.summary_plot(shap_values, df_shap)
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summary_plot = shap_summary_plot(shap_values, features=df_shap, feature_names=df_shap.columns, max_display=8)
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st.pyplot(fig=summary_plot)
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st.caption("SHAP Summary Plot of All Input Genes")
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feature_order = np.argsort(np.sum(np.abs(shap_values), axis=0)[:-1])
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