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cfb90d5
1
Parent(s):
5e24005
Update app.py
Browse files
app.py
CHANGED
@@ -29,8 +29,7 @@ xgb = xgboost.XGBRegressor(
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reg_alpha=1,
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reg_lambda=1,
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random_state=seed,
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objective="reg:squarederror"
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)
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xgb.fit(X, Y)
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@@ -69,7 +68,6 @@ def convert_df(df):
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if len(gene_list) > 1:
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df = df_total[df_total.index.isin(gene_list)]
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st.dataframe(df)
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df_shap = df
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df['Gene'] = df.index
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output = df[['Gene', 'XGB_Score']]
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csv = convert_df(output)
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@@ -80,6 +78,7 @@ if len(gene_list) > 1:
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"text/csv",
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key='download-csv'
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)
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df_shap.drop(columns='XGB_Score', inplace=True)
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shap_values = explainer.shap_values(df_shap)
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summary_plot = shap.summary_plot(shap_values, df_shap, show=False)
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reg_alpha=1,
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reg_lambda=1,
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random_state=seed,
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objective="reg:squarederror")
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xgb.fit(X, Y)
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if len(gene_list) > 1:
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df = df_total[df_total.index.isin(gene_list)]
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st.dataframe(df)
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df['Gene'] = df.index
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output = df[['Gene', 'XGB_Score']]
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csv = convert_df(output)
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"text/csv",
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key='download-csv'
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)
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df_shap = df_total[df_total.index.isin(gene_list)]
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df_shap.drop(columns='XGB_Score', inplace=True)
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shap_values = explainer.shap_values(df_shap)
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summary_plot = shap.summary_plot(shap_values, df_shap, show=False)
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