i_vorobyev
commited on
Commit
·
4199422
1
Parent(s):
289b045
fix seq validation
Browse files- app.py +2 -2
- igfold_test.py +0 -14
app.py
CHANGED
@@ -72,11 +72,11 @@ def validate(seq):
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return not leftover
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def pred_seq(seq):
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-
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is_valid = validate(seq)
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if is_valid:
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sequences = {
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"H":
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}
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f_name = ''.join([random.choice("ACDEFGHIKLMNPQRSTVWY") for _ in range(15)])
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return not leftover
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def pred_seq(seq):
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+
seq = seq.upper()
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is_valid = validate(seq)
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if is_valid:
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sequences = {
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+
"H": seq
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}
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f_name = ''.join([random.choice("ACDEFGHIKLMNPQRSTVWY") for _ in range(15)])
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igfold_test.py
DELETED
@@ -1,14 +0,0 @@
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from igfold import IgFoldRunner
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-
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sequences = {
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"H": "QVQLQESGGGLVQAGGSLTLSCAVSGLTFSNYAMGWFRQAPGKEREFVAAITWDGGNTYYTDSVKGRFTISRDNAKNTVFLQMNSLKPEDTAVYYCAAKLLGSSRYELALAGYDYWGQGTQVTVS"
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}
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pred_pdb = "my_nanobody1.pdb"
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-
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igfold = IgFoldRunner()
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igfold.fold(
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pred_pdb,
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sequences=sequences,
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do_refine=False,
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do_renum=False,
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)
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