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# deep learning # Install with conda torch>=2.1.0 torch_geometric lightning>=2.1.0 torchmetrics transformers scikit-learn dgl dglgo dgllife # configuration and utilities hydra-core # hydra-colorlog # hydra-optuna-sweeper # hydra-submitit-launcher pandas swifter # pre-commit # rich # pytest # tensorboard # feature extraction biopython rdkit networkx>=3.2.0 mhfp # tmap # model-specific requirements # subword-nmt # MONN tape_proteins # TransformerCPI2 gensim # TransformerCPI fair-esm # CoaDTI-pro # apex # recommended by TAPE-BERT # data visualization utilities seaborn plotly |