Spaces:
Running
Running
Open code files from directory + related stuff.
Browse files- biome.json +4 -0
- examples/{Airlines demo β Airlines demo.lynxkite.json} +0 -0
- examples/{Image processing β Image processing.lynxkite.json} +0 -0
- examples/{Model definition β Model definition.lynxkite.json} +0 -0
- examples/{Model use β Model use.lynxkite.json} +0 -0
- examples/{NetworkX demo β NetworkX demo.lynxkite.json} +0 -0
- examples/ODE-GNN experiment +0 -466
- examples/{PyTorch demo β PyTorch demo.lynxkite.json} +0 -0
- examples/Word2vec.lynxkite.json +0 -0
- examples/{sql β sql.lynxkite.json} +0 -0
- examples/word2vec.py +5 -8
- lynxkite-app/src/lynxkite_app/main.py +10 -1
- lynxkite-app/web/index.html +0 -1
- lynxkite-app/web/src/Directory.tsx +103 -91
- lynxkite-app/web/src/index.css +7 -0
- lynxkite-app/web/src/workspace/Workspace.tsx +6 -1
- lynxkite-core/src/lynxkite/core/ops.py +5 -3
biome.json
CHANGED
@@ -1,4 +1,7 @@
|
|
1 |
{
|
|
|
|
|
|
|
2 |
"formatter": {
|
3 |
"ignore": ["**/node_modules/**", "**/dist/**"],
|
4 |
"lineWidth": 100,
|
@@ -21,6 +24,7 @@
|
|
21 |
"useKeyWithClickEvents": "off",
|
22 |
"useValidAnchor": "off",
|
23 |
"useButtonType": "off",
|
|
|
24 |
"noNoninteractiveTabindex": "off"
|
25 |
}
|
26 |
}
|
|
|
1 |
{
|
2 |
+
"files": {
|
3 |
+
"ignore": ["**/*.lynxkite.json"]
|
4 |
+
},
|
5 |
"formatter": {
|
6 |
"ignore": ["**/node_modules/**", "**/dist/**"],
|
7 |
"lineWidth": 100,
|
|
|
24 |
"useKeyWithClickEvents": "off",
|
25 |
"useValidAnchor": "off",
|
26 |
"useButtonType": "off",
|
27 |
+
"noAutofocus": "off",
|
28 |
"noNoninteractiveTabindex": "off"
|
29 |
}
|
30 |
}
|
examples/{Airlines demo β Airlines demo.lynxkite.json}
RENAMED
File without changes
|
examples/{Image processing β Image processing.lynxkite.json}
RENAMED
File without changes
|
examples/{Model definition β Model definition.lynxkite.json}
RENAMED
File without changes
|
examples/{Model use β Model use.lynxkite.json}
RENAMED
File without changes
|
examples/{NetworkX demo β NetworkX demo.lynxkite.json}
RENAMED
File without changes
|
examples/ODE-GNN experiment
DELETED
@@ -1,466 +0,0 @@
|
|
1 |
-
{
|
2 |
-
"edges": [
|
3 |
-
{
|
4 |
-
"id": "Import CSV 1 Train/test split 1",
|
5 |
-
"source": "Import CSV 1",
|
6 |
-
"sourceHandle": "output",
|
7 |
-
"target": "Train/test split 1",
|
8 |
-
"targetHandle": "bundle"
|
9 |
-
},
|
10 |
-
{
|
11 |
-
"id": "Train/test split 1 Create graph 1",
|
12 |
-
"source": "Train/test split 1",
|
13 |
-
"sourceHandle": "output",
|
14 |
-
"target": "Create graph 1",
|
15 |
-
"targetHandle": "bundle"
|
16 |
-
},
|
17 |
-
{
|
18 |
-
"id": "Biomedical foundation graph (PLACEHOLDER) 1 Create graph 1",
|
19 |
-
"source": "Biomedical foundation graph (PLACEHOLDER) 1",
|
20 |
-
"sourceHandle": "output",
|
21 |
-
"target": "Create graph 1",
|
22 |
-
"targetHandle": "bundle"
|
23 |
-
},
|
24 |
-
{
|
25 |
-
"id": "Define model 1 Create graph 1",
|
26 |
-
"source": "Define model 1",
|
27 |
-
"sourceHandle": "output",
|
28 |
-
"target": "Create graph 1",
|
29 |
-
"targetHandle": "bundle"
|
30 |
-
},
|
31 |
-
{
|
32 |
-
"id": "Create graph 1 Train model 1",
|
33 |
-
"source": "Create graph 1",
|
34 |
-
"sourceHandle": "output",
|
35 |
-
"target": "Train model 1",
|
36 |
-
"targetHandle": "bundle"
|
37 |
-
},
|
38 |
-
{
|
39 |
-
"id": "Train model 1 Model inference 1",
|
40 |
-
"source": "Train model 1",
|
41 |
-
"sourceHandle": "output",
|
42 |
-
"target": "Model inference 1",
|
43 |
-
"targetHandle": "bundle"
|
44 |
-
}
|
45 |
-
],
|
46 |
-
"env": "LynxKite Graph Analytics",
|
47 |
-
"nodes": [
|
48 |
-
{
|
49 |
-
"data": {
|
50 |
-
"__execution_delay": 0.0,
|
51 |
-
"collapsed": null,
|
52 |
-
"display": null,
|
53 |
-
"error": null,
|
54 |
-
"meta": {
|
55 |
-
"inputs": {},
|
56 |
-
"name": "Biomedical foundation graph (PLACEHOLDER)",
|
57 |
-
"outputs": {
|
58 |
-
"output": {
|
59 |
-
"name": "output",
|
60 |
-
"position": "right",
|
61 |
-
"type": {
|
62 |
-
"type": "None"
|
63 |
-
}
|
64 |
-
}
|
65 |
-
},
|
66 |
-
"params": {
|
67 |
-
"filter_nodes": {
|
68 |
-
"default": null,
|
69 |
-
"name": "filter_nodes",
|
70 |
-
"type": {
|
71 |
-
"type": "<class 'str'>"
|
72 |
-
}
|
73 |
-
}
|
74 |
-
},
|
75 |
-
"type": "basic"
|
76 |
-
},
|
77 |
-
"params": {
|
78 |
-
"filter_nodes": "drug,gene,disease"
|
79 |
-
},
|
80 |
-
"status": "done",
|
81 |
-
"title": "Biomedical foundation graph (PLACEHOLDER)"
|
82 |
-
},
|
83 |
-
"dragHandle": ".bg-primary",
|
84 |
-
"height": 200.0,
|
85 |
-
"id": "Biomedical foundation graph (PLACEHOLDER) 1",
|
86 |
-
"position": {
|
87 |
-
"x": 230.1082040835347,
|
88 |
-
"y": 643.2454063689602
|
89 |
-
},
|
90 |
-
"type": "basic",
|
91 |
-
"width": 200.0
|
92 |
-
},
|
93 |
-
{
|
94 |
-
"data": {
|
95 |
-
"__execution_delay": null,
|
96 |
-
"collapsed": true,
|
97 |
-
"display": null,
|
98 |
-
"error": "Missing input: bundle",
|
99 |
-
"meta": {
|
100 |
-
"inputs": {
|
101 |
-
"bundle": {
|
102 |
-
"name": "bundle",
|
103 |
-
"position": "left",
|
104 |
-
"type": {
|
105 |
-
"type": "<class 'lynxkite_graph_analytics.core.Bundle'>"
|
106 |
-
}
|
107 |
-
}
|
108 |
-
},
|
109 |
-
"name": "Train/test split",
|
110 |
-
"outputs": {
|
111 |
-
"output": {
|
112 |
-
"name": "output",
|
113 |
-
"position": "right",
|
114 |
-
"type": {
|
115 |
-
"type": "None"
|
116 |
-
}
|
117 |
-
}
|
118 |
-
},
|
119 |
-
"params": {
|
120 |
-
"table_name": {
|
121 |
-
"default": null,
|
122 |
-
"name": "table_name",
|
123 |
-
"type": {
|
124 |
-
"type": "<class 'str'>"
|
125 |
-
}
|
126 |
-
},
|
127 |
-
"test_ratio": {
|
128 |
-
"default": 0.1,
|
129 |
-
"name": "test_ratio",
|
130 |
-
"type": {
|
131 |
-
"type": "<class 'float'>"
|
132 |
-
}
|
133 |
-
}
|
134 |
-
},
|
135 |
-
"type": "basic"
|
136 |
-
},
|
137 |
-
"params": {
|
138 |
-
"table_name": null,
|
139 |
-
"test_ratio": 0.1
|
140 |
-
},
|
141 |
-
"status": "planned",
|
142 |
-
"title": "Train/test split"
|
143 |
-
},
|
144 |
-
"dragHandle": ".bg-primary",
|
145 |
-
"height": 200.0,
|
146 |
-
"id": "Train/test split 1",
|
147 |
-
"position": {
|
148 |
-
"x": 313.3745540124723,
|
149 |
-
"y": 412.5466021460861
|
150 |
-
},
|
151 |
-
"type": "basic",
|
152 |
-
"width": 200.0
|
153 |
-
},
|
154 |
-
{
|
155 |
-
"data": {
|
156 |
-
"display": null,
|
157 |
-
"error": "[Errno 2] No such file or directory: ''",
|
158 |
-
"meta": {
|
159 |
-
"inputs": {},
|
160 |
-
"name": "Import CSV",
|
161 |
-
"outputs": {
|
162 |
-
"output": {
|
163 |
-
"name": "output",
|
164 |
-
"position": "right",
|
165 |
-
"type": {
|
166 |
-
"type": "None"
|
167 |
-
}
|
168 |
-
}
|
169 |
-
},
|
170 |
-
"params": {
|
171 |
-
"columns": {
|
172 |
-
"default": "<from file>",
|
173 |
-
"name": "columns",
|
174 |
-
"type": {
|
175 |
-
"type": "<class 'str'>"
|
176 |
-
}
|
177 |
-
},
|
178 |
-
"filename": {
|
179 |
-
"default": null,
|
180 |
-
"name": "filename",
|
181 |
-
"type": {
|
182 |
-
"type": "<class 'str'>"
|
183 |
-
}
|
184 |
-
},
|
185 |
-
"separator": {
|
186 |
-
"default": "<auto>",
|
187 |
-
"name": "separator",
|
188 |
-
"type": {
|
189 |
-
"type": "<class 'str'>"
|
190 |
-
}
|
191 |
-
}
|
192 |
-
},
|
193 |
-
"type": "basic"
|
194 |
-
},
|
195 |
-
"params": {
|
196 |
-
"columns": "<from file>",
|
197 |
-
"filename": null,
|
198 |
-
"separator": "<auto>"
|
199 |
-
},
|
200 |
-
"status": "done",
|
201 |
-
"title": "Import CSV"
|
202 |
-
},
|
203 |
-
"dragHandle": ".bg-primary",
|
204 |
-
"height": 200.0,
|
205 |
-
"id": "Import CSV 1",
|
206 |
-
"position": {
|
207 |
-
"x": -2.1743215714344757,
|
208 |
-
"y": 346.06014722935214
|
209 |
-
},
|
210 |
-
"type": "basic",
|
211 |
-
"width": 200.0
|
212 |
-
},
|
213 |
-
{
|
214 |
-
"data": {
|
215 |
-
"__execution_delay": 0.0,
|
216 |
-
"collapsed": null,
|
217 |
-
"display": null,
|
218 |
-
"error": "Missing input: bundle",
|
219 |
-
"meta": {
|
220 |
-
"inputs": {
|
221 |
-
"bundle": {
|
222 |
-
"name": "bundle",
|
223 |
-
"position": "left",
|
224 |
-
"type": {
|
225 |
-
"type": "<class 'lynxkite_graph_analytics.core.Bundle'>"
|
226 |
-
}
|
227 |
-
}
|
228 |
-
},
|
229 |
-
"name": "Model inference",
|
230 |
-
"outputs": {
|
231 |
-
"output": {
|
232 |
-
"name": "output",
|
233 |
-
"position": "right",
|
234 |
-
"type": {
|
235 |
-
"type": "None"
|
236 |
-
}
|
237 |
-
}
|
238 |
-
},
|
239 |
-
"params": {
|
240 |
-
"model_mapping": {
|
241 |
-
"default": null,
|
242 |
-
"name": "model_mapping",
|
243 |
-
"type": {
|
244 |
-
"type": "<class 'str'>"
|
245 |
-
}
|
246 |
-
},
|
247 |
-
"model_name": {
|
248 |
-
"default": null,
|
249 |
-
"name": "model_name",
|
250 |
-
"type": {
|
251 |
-
"type": "<class 'str'>"
|
252 |
-
}
|
253 |
-
},
|
254 |
-
"save_output_as": {
|
255 |
-
"default": "prediction",
|
256 |
-
"name": "save_output_as",
|
257 |
-
"type": {
|
258 |
-
"type": "<class 'str'>"
|
259 |
-
}
|
260 |
-
}
|
261 |
-
},
|
262 |
-
"type": "basic"
|
263 |
-
},
|
264 |
-
"params": {
|
265 |
-
"model_mapping": "input: data_test",
|
266 |
-
"model_name": "model",
|
267 |
-
"save_output_as": "prediction"
|
268 |
-
},
|
269 |
-
"status": "done",
|
270 |
-
"title": "Model inference"
|
271 |
-
},
|
272 |
-
"dragHandle": ".bg-primary",
|
273 |
-
"height": 339.0,
|
274 |
-
"id": "Model inference 1",
|
275 |
-
"position": {
|
276 |
-
"x": 1736.5697434242886,
|
277 |
-
"y": 357.0743204289906
|
278 |
-
},
|
279 |
-
"type": "basic",
|
280 |
-
"width": 281.0
|
281 |
-
},
|
282 |
-
{
|
283 |
-
"data": {
|
284 |
-
"__execution_delay": null,
|
285 |
-
"collapsed": true,
|
286 |
-
"display": null,
|
287 |
-
"error": "Missing input: bundle",
|
288 |
-
"meta": {
|
289 |
-
"inputs": {
|
290 |
-
"bundle": {
|
291 |
-
"name": "bundle",
|
292 |
-
"position": "left",
|
293 |
-
"type": {
|
294 |
-
"type": "list[lynxkite_graph_analytics.core.Bundle]"
|
295 |
-
}
|
296 |
-
}
|
297 |
-
},
|
298 |
-
"name": "Organize",
|
299 |
-
"outputs": {
|
300 |
-
"output": {
|
301 |
-
"name": "output",
|
302 |
-
"position": "right",
|
303 |
-
"type": {
|
304 |
-
"type": "None"
|
305 |
-
}
|
306 |
-
}
|
307 |
-
},
|
308 |
-
"params": {
|
309 |
-
"relations": {
|
310 |
-
"default": null,
|
311 |
-
"name": "relations",
|
312 |
-
"type": {
|
313 |
-
"type": "<class 'str'>"
|
314 |
-
}
|
315 |
-
}
|
316 |
-
},
|
317 |
-
"type": "graph_creation_view"
|
318 |
-
},
|
319 |
-
"params": {
|
320 |
-
"relations": null
|
321 |
-
},
|
322 |
-
"status": "planned",
|
323 |
-
"title": "Organize"
|
324 |
-
},
|
325 |
-
"dragHandle": ".bg-primary",
|
326 |
-
"height": 322.0,
|
327 |
-
"id": "Create graph 1",
|
328 |
-
"position": {
|
329 |
-
"x": 846.6882598271658,
|
330 |
-
"y": 480.6258932907771
|
331 |
-
},
|
332 |
-
"type": "graph_creation_view",
|
333 |
-
"width": 313.0
|
334 |
-
},
|
335 |
-
{
|
336 |
-
"data": {
|
337 |
-
"__execution_delay": 0.0,
|
338 |
-
"collapsed": null,
|
339 |
-
"display": null,
|
340 |
-
"error": null,
|
341 |
-
"meta": {
|
342 |
-
"inputs": {},
|
343 |
-
"name": "Define model",
|
344 |
-
"outputs": {
|
345 |
-
"output": {
|
346 |
-
"name": "output",
|
347 |
-
"position": "right",
|
348 |
-
"type": {
|
349 |
-
"type": "None"
|
350 |
-
}
|
351 |
-
}
|
352 |
-
},
|
353 |
-
"params": {
|
354 |
-
"model_workspace": {
|
355 |
-
"default": null,
|
356 |
-
"name": "model_workspace",
|
357 |
-
"type": {
|
358 |
-
"type": "<class 'str'>"
|
359 |
-
}
|
360 |
-
},
|
361 |
-
"save_as": {
|
362 |
-
"default": "model",
|
363 |
-
"name": "save_as",
|
364 |
-
"type": {
|
365 |
-
"type": "<class 'str'>"
|
366 |
-
}
|
367 |
-
}
|
368 |
-
},
|
369 |
-
"position": {
|
370 |
-
"x": 286.0,
|
371 |
-
"y": 208.0
|
372 |
-
},
|
373 |
-
"type": "basic"
|
374 |
-
},
|
375 |
-
"params": {
|
376 |
-
"model_workspace": "ODE-GNN",
|
377 |
-
"save_as": "model"
|
378 |
-
},
|
379 |
-
"status": "done",
|
380 |
-
"title": "Define model"
|
381 |
-
},
|
382 |
-
"dragHandle": ".bg-primary",
|
383 |
-
"height": 200.0,
|
384 |
-
"id": "Define model 1",
|
385 |
-
"position": {
|
386 |
-
"x": 311.976524267066,
|
387 |
-
"y": 146.99006795914332
|
388 |
-
},
|
389 |
-
"type": "basic",
|
390 |
-
"width": 200.0
|
391 |
-
},
|
392 |
-
{
|
393 |
-
"data": {
|
394 |
-
"__execution_delay": 0.0,
|
395 |
-
"collapsed": null,
|
396 |
-
"display": null,
|
397 |
-
"error": "Missing input: bundle",
|
398 |
-
"meta": {
|
399 |
-
"inputs": {
|
400 |
-
"bundle": {
|
401 |
-
"name": "bundle",
|
402 |
-
"position": "left",
|
403 |
-
"type": {
|
404 |
-
"type": "<class 'lynxkite_graph_analytics.core.Bundle'>"
|
405 |
-
}
|
406 |
-
}
|
407 |
-
},
|
408 |
-
"name": "Train model",
|
409 |
-
"outputs": {
|
410 |
-
"output": {
|
411 |
-
"name": "output",
|
412 |
-
"position": "right",
|
413 |
-
"type": {
|
414 |
-
"type": "None"
|
415 |
-
}
|
416 |
-
}
|
417 |
-
},
|
418 |
-
"params": {
|
419 |
-
"epochs": {
|
420 |
-
"default": 1.0,
|
421 |
-
"name": "epochs",
|
422 |
-
"type": {
|
423 |
-
"type": "<class 'int'>"
|
424 |
-
}
|
425 |
-
},
|
426 |
-
"model_mapping": {
|
427 |
-
"default": null,
|
428 |
-
"name": "model_mapping",
|
429 |
-
"type": {
|
430 |
-
"type": "<class 'str'>"
|
431 |
-
}
|
432 |
-
},
|
433 |
-
"model_name": {
|
434 |
-
"default": null,
|
435 |
-
"name": "model_name",
|
436 |
-
"type": {
|
437 |
-
"type": "<class 'str'>"
|
438 |
-
}
|
439 |
-
}
|
440 |
-
},
|
441 |
-
"position": {
|
442 |
-
"x": 995.0,
|
443 |
-
"y": 350.0
|
444 |
-
},
|
445 |
-
"type": "basic"
|
446 |
-
},
|
447 |
-
"params": {
|
448 |
-
"epochs": 1.0,
|
449 |
-
"model_mapping": "input: data_train",
|
450 |
-
"model_name": "model"
|
451 |
-
},
|
452 |
-
"status": "planned",
|
453 |
-
"title": "Train model"
|
454 |
-
},
|
455 |
-
"dragHandle": ".bg-primary",
|
456 |
-
"height": 342.0,
|
457 |
-
"id": "Train model 1",
|
458 |
-
"position": {
|
459 |
-
"x": 1358.7213662492159,
|
460 |
-
"y": 352.03096133771896
|
461 |
-
},
|
462 |
-
"type": "basic",
|
463 |
-
"width": 296.0
|
464 |
-
}
|
465 |
-
]
|
466 |
-
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
examples/{PyTorch demo β PyTorch demo.lynxkite.json}
RENAMED
File without changes
|
examples/Word2vec.lynxkite.json
ADDED
The diff for this file is too large to render.
See raw diff
|
|
examples/{sql β sql.lynxkite.json}
RENAMED
File without changes
|
examples/word2vec.py
CHANGED
@@ -5,17 +5,14 @@ import pandas as pd
|
|
5 |
ENV = "LynxKite Graph Analytics"
|
6 |
|
7 |
|
8 |
-
@op(ENV, "Word2vec for the top 1000 words",
|
9 |
def word2vec_1000():
|
10 |
model = staticvectors.StaticVectors("neuml/word2vec-quantized")
|
11 |
-
|
12 |
-
|
13 |
-
|
14 |
-
{
|
15 |
-
"word": words,
|
16 |
-
"embedding": model.embeddings(words).tolist(),
|
17 |
-
}
|
18 |
)
|
|
|
19 |
return df
|
20 |
|
21 |
|
|
|
5 |
ENV = "LynxKite Graph Analytics"
|
6 |
|
7 |
|
8 |
+
@op(ENV, "Word2vec for the top 1000 words", slow=True)
|
9 |
def word2vec_1000():
|
10 |
model = staticvectors.StaticVectors("neuml/word2vec-quantized")
|
11 |
+
df = pd.read_csv(
|
12 |
+
"https://gist.githubusercontent.com/deekayen/4148741/raw/98d35708fa344717d8eee15d11987de6c8e26d7d/1-1000.txt",
|
13 |
+
names=["word"],
|
|
|
|
|
|
|
|
|
14 |
)
|
15 |
+
df["embedding"] = model.embeddings(df.word.tolist()).tolist()
|
16 |
return df
|
17 |
|
18 |
|
lynxkite-app/src/lynxkite_app/main.py
CHANGED
@@ -84,6 +84,15 @@ class DirectoryEntry(pydantic.BaseModel):
|
|
84 |
type: str
|
85 |
|
86 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
87 |
@app.get("/api/dir/list")
|
88 |
def list_dir(path: str):
|
89 |
path = data_path / path
|
@@ -92,7 +101,7 @@ def list_dir(path: str):
|
|
92 |
[
|
93 |
DirectoryEntry(
|
94 |
name=str(p.relative_to(data_path)),
|
95 |
-
type=
|
96 |
)
|
97 |
for p in path.iterdir()
|
98 |
if not p.name.startswith(".")
|
|
|
84 |
type: str
|
85 |
|
86 |
|
87 |
+
def _get_path_type(path: pathlib.Path) -> str:
|
88 |
+
if path.is_dir():
|
89 |
+
return "directory"
|
90 |
+
elif path.suffixes[-2:] == [".lynxkite", ".json"]:
|
91 |
+
return "workspace"
|
92 |
+
else:
|
93 |
+
return "file"
|
94 |
+
|
95 |
+
|
96 |
@app.get("/api/dir/list")
|
97 |
def list_dir(path: str):
|
98 |
path = data_path / path
|
|
|
101 |
[
|
102 |
DirectoryEntry(
|
103 |
name=str(p.relative_to(data_path)),
|
104 |
+
type=_get_path_type(p),
|
105 |
)
|
106 |
for p in path.iterdir()
|
107 |
if not p.name.startswith(".")
|
lynxkite-app/web/index.html
CHANGED
@@ -4,7 +4,6 @@
|
|
4 |
<meta charset="UTF-8" />
|
5 |
<link rel="icon" type="image/svg+xml" href="/src/assets/favicon.ico" />
|
6 |
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
|
7 |
-
<title>LynxKite 2025</title>
|
8 |
</head>
|
9 |
<body>
|
10 |
<div id="root"></div>
|
|
|
4 |
<meta charset="UTF-8" />
|
5 |
<link rel="icon" type="image/svg+xml" href="/src/assets/favicon.ico" />
|
6 |
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
|
|
|
7 |
</head>
|
8 |
<body>
|
9 |
<div id="root"></div>
|
lynxkite-app/web/src/Directory.tsx
CHANGED
@@ -15,9 +15,46 @@ import FolderPlus from "~icons/tabler/folder-plus";
|
|
15 |
// @ts-ignore
|
16 |
import Home from "~icons/tabler/home";
|
17 |
// @ts-ignore
|
|
|
|
|
|
|
|
|
18 |
import Trash from "~icons/tabler/trash";
|
19 |
import logo from "./assets/logo.png";
|
20 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
21 |
const fetcher = (url: string) => fetch(url).then((res) => res.json());
|
22 |
|
23 |
export default function () {
|
@@ -27,48 +64,41 @@ export default function () {
|
|
27 |
dedupingInterval: 0,
|
28 |
});
|
29 |
const navigate = useNavigate();
|
30 |
-
const [isCreatingDir, setIsCreatingDir] = useState(false);
|
31 |
-
const [isCreatingWorkspace, setIsCreatingWorkspace] = useState(false);
|
32 |
|
33 |
function link(item: DirectoryEntry) {
|
34 |
if (item.type === "directory") {
|
35 |
return `/dir/${item.name}`;
|
36 |
}
|
37 |
-
|
|
|
|
|
|
|
38 |
}
|
39 |
|
40 |
function shortName(item: DirectoryEntry) {
|
41 |
-
return item.name
|
|
|
|
|
|
|
42 |
}
|
43 |
|
44 |
-
function
|
45 |
-
|
46 |
-
|
47 |
-
const name = `${baseName}${i ? ` ${i}` : ""}`;
|
48 |
-
if (!list.find((item) => item.name === name)) {
|
49 |
-
return name;
|
50 |
-
}
|
51 |
-
i++;
|
52 |
-
}
|
53 |
}
|
54 |
-
|
55 |
-
function newWorkspaceIn(path: string, list: DirectoryEntry[], workspaceName?: string) {
|
56 |
const pathSlash = path ? `${path}/` : "";
|
57 |
-
|
58 |
-
navigate(`/edit/${pathSlash}${name}`, { replace: true });
|
59 |
}
|
60 |
-
|
61 |
-
async function newFolderIn(path: string, list: DirectoryEntry[], folderName?: string) {
|
62 |
-
const name = folderName || newName(list, "New Folder");
|
63 |
const pathSlash = path ? `${path}/` : "";
|
64 |
-
|
65 |
const res = await fetch("/api/dir/mkdir", {
|
66 |
method: "POST",
|
67 |
headers: { "Content-Type": "application/json" },
|
68 |
-
body: JSON.stringify({ path: pathSlash +
|
69 |
});
|
70 |
if (res.ok) {
|
71 |
-
navigate(`/dir/${pathSlash}${
|
72 |
} else {
|
73 |
alert("Failed to create folder.");
|
74 |
}
|
@@ -105,84 +135,66 @@ export default function () {
|
|
105 |
{list.data && (
|
106 |
<>
|
107 |
<div className="actions">
|
108 |
-
<
|
109 |
-
{
|
110 |
-
|
111 |
-
|
112 |
-
|
113 |
-
|
114 |
-
|
115 |
-
|
116 |
-
|
117 |
-
|
118 |
-
|
119 |
-
|
120 |
-
|
121 |
-
|
122 |
-
|
123 |
-
|
124 |
-
|
125 |
-
|
126 |
-
|
127 |
-
|
128 |
-
|
129 |
-
<button type="button" onClick={() => setIsCreatingWorkspace(true)}>
|
130 |
-
<FolderPlus /> New workspace
|
131 |
-
</button>
|
132 |
-
</div>
|
133 |
-
|
134 |
-
<div className="new-folder">
|
135 |
-
{isCreatingDir && (
|
136 |
-
// @ts-ignore
|
137 |
-
<form
|
138 |
-
onSubmit={(e) => {
|
139 |
-
e.preventDefault();
|
140 |
-
newFolderIn(
|
141 |
-
path || "",
|
142 |
-
list.data,
|
143 |
-
(e.target as HTMLFormElement).folderName.value.trim(),
|
144 |
-
);
|
145 |
-
}}
|
146 |
-
>
|
147 |
-
<input
|
148 |
-
type="text"
|
149 |
-
name="folderName"
|
150 |
-
defaultValue={newName(list.data)}
|
151 |
-
placeholder={newName(list.data)}
|
152 |
-
/>
|
153 |
-
</form>
|
154 |
-
)}
|
155 |
-
<button type="button" onClick={() => setIsCreatingDir(true)}>
|
156 |
-
<FolderPlus /> New folder
|
157 |
-
</button>
|
158 |
-
</div>
|
159 |
</div>
|
160 |
|
161 |
-
{path
|
162 |
<div className="breadcrumbs">
|
163 |
<Link to="/dir/">
|
164 |
<Home />
|
165 |
</Link>{" "}
|
166 |
<span className="current-folder">{path}</span>
|
|
|
167 |
</div>
|
|
|
|
|
168 |
)}
|
169 |
|
170 |
-
{list.data.map(
|
171 |
-
|
172 |
-
|
173 |
-
{item.
|
174 |
-
|
175 |
-
|
176 |
-
|
177 |
-
|
178 |
-
|
179 |
-
|
180 |
-
|
181 |
-
|
182 |
-
|
183 |
-
|
184 |
-
|
185 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
186 |
</>
|
187 |
)}
|
188 |
</div>{" "}
|
|
|
15 |
// @ts-ignore
|
16 |
import Home from "~icons/tabler/home";
|
17 |
// @ts-ignore
|
18 |
+
import LayoutGrid from "~icons/tabler/layout-grid";
|
19 |
+
// @ts-ignore
|
20 |
+
import LayoutGridAdd from "~icons/tabler/layout-grid-add";
|
21 |
+
// @ts-ignore
|
22 |
import Trash from "~icons/tabler/trash";
|
23 |
import logo from "./assets/logo.png";
|
24 |
|
25 |
+
function EntryCreator(props: {
|
26 |
+
label: string;
|
27 |
+
icon: JSX.Element;
|
28 |
+
onCreate: (name: string) => void;
|
29 |
+
}) {
|
30 |
+
const [isCreating, setIsCreating] = useState(false);
|
31 |
+
return (
|
32 |
+
<>
|
33 |
+
{isCreating ? (
|
34 |
+
<form
|
35 |
+
onSubmit={(e) => {
|
36 |
+
e.preventDefault();
|
37 |
+
props.onCreate((e.target as HTMLFormElement).entryName.value.trim());
|
38 |
+
}}
|
39 |
+
>
|
40 |
+
<input
|
41 |
+
className="input input-ghost w-full"
|
42 |
+
autoFocus
|
43 |
+
type="text"
|
44 |
+
name="entryName"
|
45 |
+
onBlur={() => setIsCreating(false)}
|
46 |
+
placeholder={`${props.label} name`}
|
47 |
+
/>
|
48 |
+
</form>
|
49 |
+
) : (
|
50 |
+
<button type="button" onClick={() => setIsCreating(true)}>
|
51 |
+
{props.icon} {props.label}
|
52 |
+
</button>
|
53 |
+
)}
|
54 |
+
</>
|
55 |
+
);
|
56 |
+
}
|
57 |
+
|
58 |
const fetcher = (url: string) => fetch(url).then((res) => res.json());
|
59 |
|
60 |
export default function () {
|
|
|
64 |
dedupingInterval: 0,
|
65 |
});
|
66 |
const navigate = useNavigate();
|
|
|
|
|
67 |
|
68 |
function link(item: DirectoryEntry) {
|
69 |
if (item.type === "directory") {
|
70 |
return `/dir/${item.name}`;
|
71 |
}
|
72 |
+
if (item.type === "workspace") {
|
73 |
+
return `/edit/${item.name}`;
|
74 |
+
}
|
75 |
+
return `/code/${item.name}`;
|
76 |
}
|
77 |
|
78 |
function shortName(item: DirectoryEntry) {
|
79 |
+
return item.name
|
80 |
+
.split("/")
|
81 |
+
.pop()
|
82 |
+
?.replace(/[.]lynxkite[.]json$/, "");
|
83 |
}
|
84 |
|
85 |
+
function newWorkspaceIn(path: string, workspaceName: string) {
|
86 |
+
const pathSlash = path ? `${path}/` : "";
|
87 |
+
navigate(`/edit/${pathSlash}${workspaceName}.lynxkite.json`, { replace: true });
|
|
|
|
|
|
|
|
|
|
|
|
|
88 |
}
|
89 |
+
function newCodeFile(path: string, name: string) {
|
|
|
90 |
const pathSlash = path ? `${path}/` : "";
|
91 |
+
navigate(`/code/${pathSlash}${name}`, { replace: true });
|
|
|
92 |
}
|
93 |
+
async function newFolderIn(path: string, folderName: string) {
|
|
|
|
|
94 |
const pathSlash = path ? `${path}/` : "";
|
|
|
95 |
const res = await fetch("/api/dir/mkdir", {
|
96 |
method: "POST",
|
97 |
headers: { "Content-Type": "application/json" },
|
98 |
+
body: JSON.stringify({ path: pathSlash + folderName }),
|
99 |
});
|
100 |
if (res.ok) {
|
101 |
+
navigate(`/dir/${pathSlash}${folderName}`);
|
102 |
} else {
|
103 |
alert("Failed to create folder.");
|
104 |
}
|
|
|
135 |
{list.data && (
|
136 |
<>
|
137 |
<div className="actions">
|
138 |
+
<EntryCreator
|
139 |
+
onCreate={(name) => {
|
140 |
+
newWorkspaceIn(path || "", name);
|
141 |
+
}}
|
142 |
+
icon={<LayoutGridAdd />}
|
143 |
+
label="New workspace"
|
144 |
+
/>
|
145 |
+
<EntryCreator
|
146 |
+
onCreate={(name) => {
|
147 |
+
newCodeFile(path || "", name);
|
148 |
+
}}
|
149 |
+
icon={<FilePlus />}
|
150 |
+
label="New code file"
|
151 |
+
/>
|
152 |
+
<EntryCreator
|
153 |
+
onCreate={(name: string) => {
|
154 |
+
newFolderIn(path || "", name);
|
155 |
+
}}
|
156 |
+
icon={<FolderPlus />}
|
157 |
+
label="New folder"
|
158 |
+
/>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
159 |
</div>
|
160 |
|
161 |
+
{path ? (
|
162 |
<div className="breadcrumbs">
|
163 |
<Link to="/dir/">
|
164 |
<Home />
|
165 |
</Link>{" "}
|
166 |
<span className="current-folder">{path}</span>
|
167 |
+
<title>{path}</title>
|
168 |
</div>
|
169 |
+
) : (
|
170 |
+
<title>LynxKite 2000:MM</title>
|
171 |
)}
|
172 |
|
173 |
+
{list.data.map(
|
174 |
+
(item: DirectoryEntry) =>
|
175 |
+
!shortName(item)?.startsWith("__") && (
|
176 |
+
<div key={item.name} className="entry">
|
177 |
+
<Link key={link(item)} to={link(item)}>
|
178 |
+
{item.type === "directory" ? (
|
179 |
+
<Folder />
|
180 |
+
) : item.type === "workspace" ? (
|
181 |
+
<LayoutGrid />
|
182 |
+
) : (
|
183 |
+
<File />
|
184 |
+
)}
|
185 |
+
{shortName(item)}
|
186 |
+
</Link>
|
187 |
+
<button
|
188 |
+
type="button"
|
189 |
+
onClick={() => {
|
190 |
+
deleteItem(item);
|
191 |
+
}}
|
192 |
+
>
|
193 |
+
<Trash />
|
194 |
+
</button>
|
195 |
+
</div>
|
196 |
+
),
|
197 |
+
)}
|
198 |
</>
|
199 |
)}
|
200 |
</div>{" "}
|
lynxkite-app/web/src/index.css
CHANGED
@@ -326,7 +326,14 @@ body {
|
|
326 |
.actions {
|
327 |
display: flex;
|
328 |
justify-content: space-evenly;
|
|
|
|
|
329 |
padding: 5px;
|
|
|
|
|
|
|
|
|
|
|
330 |
}
|
331 |
|
332 |
.actions a {
|
|
|
326 |
.actions {
|
327 |
display: flex;
|
328 |
justify-content: space-evenly;
|
329 |
+
align-items: center;
|
330 |
+
height: 50px;
|
331 |
padding: 5px;
|
332 |
+
|
333 |
+
form,
|
334 |
+
button {
|
335 |
+
flex: 1;
|
336 |
+
}
|
337 |
}
|
338 |
|
339 |
.actions a {
|
lynxkite-app/web/src/workspace/Workspace.tsx
CHANGED
@@ -53,6 +53,10 @@ function LynxKiteFlow() {
|
|
53 |
const [nodes, setNodes] = useState([] as Node[]);
|
54 |
const [edges, setEdges] = useState([] as Edge[]);
|
55 |
const { path } = useParams();
|
|
|
|
|
|
|
|
|
56 |
const [state, setState] = useState({ workspace: {} as Workspace });
|
57 |
const [message, setMessage] = useState(null as string | null);
|
58 |
useEffect(() => {
|
@@ -320,7 +324,8 @@ function LynxKiteFlow() {
|
|
320 |
<a className="logo" href="">
|
321 |
<img alt="" src={favicon} />
|
322 |
</a>
|
323 |
-
<div className="ws-name">{
|
|
|
324 |
<EnvironmentSelector
|
325 |
options={Object.keys(catalog.data || {})}
|
326 |
value={state.workspace.env!}
|
|
|
53 |
const [nodes, setNodes] = useState([] as Node[]);
|
54 |
const [edges, setEdges] = useState([] as Edge[]);
|
55 |
const { path } = useParams();
|
56 |
+
const shortPath = path!
|
57 |
+
.split("/")
|
58 |
+
.pop()!
|
59 |
+
.replace(/[.]lynxkite[.]json$/, "");
|
60 |
const [state, setState] = useState({ workspace: {} as Workspace });
|
61 |
const [message, setMessage] = useState(null as string | null);
|
62 |
useEffect(() => {
|
|
|
324 |
<a className="logo" href="">
|
325 |
<img alt="" src={favicon} />
|
326 |
</a>
|
327 |
+
<div className="ws-name">{shortPath}</div>
|
328 |
+
<title>{shortPath}</title>
|
329 |
<EnvironmentSelector
|
330 |
options={Object.keys(catalog.data || {})}
|
331 |
value={state.workspace.env!}
|
lynxkite-core/src/lynxkite/core/ops.py
CHANGED
@@ -196,13 +196,14 @@ class Op(BaseConfig):
|
|
196 |
return res
|
197 |
|
198 |
|
199 |
-
def op(env: str, name: str, *, view="basic", outputs=None, params=None,
|
200 |
"""Decorator for defining an operation."""
|
201 |
|
202 |
def decorator(func):
|
203 |
-
if cache:
|
204 |
-
func = mem.cache(func)
|
205 |
sig = inspect.signature(func)
|
|
|
|
|
|
|
206 |
# Positional arguments are inputs.
|
207 |
inputs = {
|
208 |
name: Input(name=name, type=param.annotation)
|
@@ -319,6 +320,7 @@ def slow(func):
|
|
319 |
return wrapper
|
320 |
|
321 |
|
|
|
322 |
CATALOGS_SNAPSHOTS: dict[str, Catalogs] = {}
|
323 |
|
324 |
|
|
|
196 |
return res
|
197 |
|
198 |
|
199 |
+
def op(env: str, name: str, *, view="basic", outputs=None, params=None, slow=False):
|
200 |
"""Decorator for defining an operation."""
|
201 |
|
202 |
def decorator(func):
|
|
|
|
|
203 |
sig = inspect.signature(func)
|
204 |
+
if slow:
|
205 |
+
func = mem.cache(func)
|
206 |
+
func = _global_slow(func)
|
207 |
# Positional arguments are inputs.
|
208 |
inputs = {
|
209 |
name: Input(name=name, type=param.annotation)
|
|
|
320 |
return wrapper
|
321 |
|
322 |
|
323 |
+
_global_slow = slow # For access inside op().
|
324 |
CATALOGS_SNAPSHOTS: dict[str, Catalogs] = {}
|
325 |
|
326 |
|