Spaces:
Running
Running
Non-blocking training.
Browse files- examples/Model definition +144 -74
- examples/Model use +70 -70
- lynxkite-app/web/src/workspace/nodes/NodeParameter.tsx +1 -0
- lynxkite-core/src/lynxkite/core/ops.py +11 -0
- lynxkite-graph-analytics/src/lynxkite_graph_analytics/core.py +10 -2
- lynxkite-graph-analytics/src/lynxkite_graph_analytics/lynxkite_ops.py +4 -0
examples/Model definition
CHANGED
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{
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"edges": [
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"id": "Linear 2 Activation 1",
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"id": "MSE loss 2 Optimizer 2",
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"source": "MSE loss 2",
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"type": "tensor"
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"name": "Input: tensor",
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"id": "MSE loss 2 Optimizer 2",
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examples/Model use
CHANGED
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860 |
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@@ -869,12 +861,12 @@
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870 |
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1000 |
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1001 |
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1002 |
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1003 |
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"model": "ModelConfig(model=Sequential(\n (0) - Identity(): Input__tensor_1_x -> START_Repeat_1_output\n (1) - Linear(in_features=4, out_features=4, bias=True): START_Repeat_1_output ->
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1004 |
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1005 |
"relations": []
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1006 |
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@@ -1016,7 +1016,7 @@
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1016 |
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1017 |
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1018 |
"columns": [
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1019 |
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"
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1020 |
"x",
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1021 |
"y"
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1022 |
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@@ -1035,8 +1035,8 @@
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|
1035 |
"Input__tensor_1_x"
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1036 |
],
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1037 |
"loss_inputs": [
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1038 |
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1039 |
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1040 |
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1041 |
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1042 |
"END_Repeat_1_output"
|
@@ -1210,8 +1210,8 @@
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1210 |
"Input__tensor_1_x"
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1211 |
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1212 |
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1213 |
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1214 |
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1216 |
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1217 |
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1270 |
"type": "basic"
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1271 |
},
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1272 |
"params": {
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1273 |
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"epochs": "
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1274 |
"input_mapping": "{\"map\":{\"Input__tensor_1_x\":{\"df\":\"df_train\",\"column\":\"x\"},\"Input__tensor_3_x\":{\"df\":\"df_train\",\"column\":\"y\"}}}",
|
1275 |
"model_name": "model"
|
1276 |
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|
@@ -1322,8 +1322,8 @@
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|
1322 |
"Input__tensor_1_x"
|
1323 |
],
|
1324 |
"loss_inputs": [
|
1325 |
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|
1326 |
-
"
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1327 |
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1328 |
"outputs": [
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1329 |
"END_Repeat_1_output"
|
@@ -1384,13 +1384,13 @@
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|
1384 |
"params": {
|
1385 |
"input_mapping": "{\"map\":{\"Input__tensor_1_x\":{\"df\":\"df_test\",\"column\":\"x\"}}}",
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1386 |
"model_name": "model",
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1387 |
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"output_mapping": "{\"map\":{\"END_Repeat_1_output\":{\"df\":\"df_test\",\"column\":\"
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"title": "Model inference"
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"dragHandle": ".bg-primary",
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[
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953 |
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955 |
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956 |
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957 |
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958 |
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959 |
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[
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960 |
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963 |
[
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1000 |
}
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1001 |
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"other": {
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1003 |
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"model": "ModelConfig(model=Sequential(\n (0) - Identity(): Input__tensor_1_x -> START_Repeat_1_output\n (1) - Linear(in_features=4, out_features=4, bias=True): START_Repeat_1_output -> Linear_1_output\n (2) - <function leaky_relu at 0x762d1f82c680>: Linear_1_output -> Activation_1_output\n (3) - Identity(): Activation_1_output -> START_Repeat_1_output\n (4) - Linear(in_features=4, out_features=4, bias=True): START_Repeat_1_output -> Linear_1_output\n (5) - <function leaky_relu at 0x762d1f82c680>: Linear_1_output -> Activation_1_output\n (6) - Identity(): Activation_1_output -> END_Repeat_1_output\n (7) - Identity(): END_Repeat_1_output -> END_Repeat_1_output\n), model_inputs=['Input__tensor_1_x'], model_outputs=['END_Repeat_1_output'], loss_inputs=['END_Repeat_1_output', 'Input__tensor_3_x'], loss=Sequential(\n (0) - <function mse_loss at 0x762d1f82e160>: END_Repeat_1_output, Input__tensor_3_x -> MSE_loss_2_output\n (1) - Identity(): MSE_loss_2_output -> loss\n), optimizer_parameters={'lr': 0.1, 'type': <OptionsFor_type.SGD: 4>}, optimizer=SGD (\nParameter Group 0\n dampening: 0\n differentiable: False\n foreach: None\n fused: None\n lr: 0.1\n maximize: False\n momentum: 0\n nesterov: False\n weight_decay: 0\n), source_workspace='Model definition', trained=True)"
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1004 |
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1016 |
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|
1017 |
"df_test": {
|
1018 |
"columns": [
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1019 |
+
"pred",
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1020 |
"x",
|
1021 |
"y"
|
1022 |
]
|
|
|
1035 |
"Input__tensor_1_x"
|
1036 |
],
|
1037 |
"loss_inputs": [
|
1038 |
+
"END_Repeat_1_output",
|
1039 |
+
"Input__tensor_3_x"
|
1040 |
],
|
1041 |
"outputs": [
|
1042 |
"END_Repeat_1_output"
|
|
|
1210 |
"Input__tensor_1_x"
|
1211 |
],
|
1212 |
"loss_inputs": [
|
1213 |
+
"END_Repeat_1_output",
|
1214 |
+
"Input__tensor_3_x"
|
1215 |
],
|
1216 |
"outputs": [
|
1217 |
"END_Repeat_1_output"
|
|
|
1270 |
"type": "basic"
|
1271 |
},
|
1272 |
"params": {
|
1273 |
+
"epochs": "1003",
|
1274 |
"input_mapping": "{\"map\":{\"Input__tensor_1_x\":{\"df\":\"df_train\",\"column\":\"x\"},\"Input__tensor_3_x\":{\"df\":\"df_train\",\"column\":\"y\"}}}",
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1275 |
"model_name": "model"
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1276 |
},
|
|
|
1322 |
"Input__tensor_1_x"
|
1323 |
],
|
1324 |
"loss_inputs": [
|
1325 |
+
"END_Repeat_1_output",
|
1326 |
+
"Input__tensor_3_x"
|
1327 |
],
|
1328 |
"outputs": [
|
1329 |
"END_Repeat_1_output"
|
|
|
1384 |
"params": {
|
1385 |
"input_mapping": "{\"map\":{\"Input__tensor_1_x\":{\"df\":\"df_test\",\"column\":\"x\"}}}",
|
1386 |
"model_name": "model",
|
1387 |
+
"output_mapping": "{\"map\":{\"END_Repeat_1_output\":{\"df\":\"df_test\",\"column\":\"pred\"}}}"
|
1388 |
},
|
1389 |
"status": "done",
|
1390 |
"title": "Model inference"
|
1391 |
},
|
1392 |
"dragHandle": ".bg-primary",
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1393 |
+
"height": 650.0,
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"id": "Model inference 1",
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"position": {
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"x": 2181.718373860645,
|
lynxkite-app/web/src/workspace/nodes/NodeParameter.tsx
CHANGED
@@ -91,6 +91,7 @@ function ModelMapping({ value, onChange, data, variant }: any) {
|
|
91 |
const dfs: { [df: string]: string[] } = {};
|
92 |
const inputs = data?.input_metadata?.value ?? data?.input_metadata ?? [];
|
93 |
for (const input of inputs) {
|
|
|
94 |
const dataframes = input.dataframes as {
|
95 |
[df: string]: { columns: string[] };
|
96 |
};
|
|
|
91 |
const dfs: { [df: string]: string[] } = {};
|
92 |
const inputs = data?.input_metadata?.value ?? data?.input_metadata ?? [];
|
93 |
for (const input of inputs) {
|
94 |
+
if (!input.dataframes) continue;
|
95 |
const dataframes = input.dataframes as {
|
96 |
[df: string]: { columns: string[] };
|
97 |
};
|
lynxkite-core/src/lynxkite/core/ops.py
CHANGED
@@ -1,6 +1,7 @@
|
|
1 |
"""API for implementing LynxKite operations."""
|
2 |
|
3 |
from __future__ import annotations
|
|
|
4 |
import enum
|
5 |
import functools
|
6 |
import inspect
|
@@ -297,3 +298,13 @@ def op_registration(env: str):
|
|
297 |
def passive_op_registration(env: str):
|
298 |
"""Returns a function that can be used to register operations without associated code."""
|
299 |
return functools.partial(register_passive_op, env)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
"""API for implementing LynxKite operations."""
|
2 |
|
3 |
from __future__ import annotations
|
4 |
+
import asyncio
|
5 |
import enum
|
6 |
import functools
|
7 |
import inspect
|
|
|
298 |
def passive_op_registration(env: str):
|
299 |
"""Returns a function that can be used to register operations without associated code."""
|
300 |
return functools.partial(register_passive_op, env)
|
301 |
+
|
302 |
+
|
303 |
+
def slow(func):
|
304 |
+
"""Decorator for slow, blocking operations. Turns them into separate threads."""
|
305 |
+
|
306 |
+
@functools.wraps(func)
|
307 |
+
async def wrapper(*args, **kwargs):
|
308 |
+
return await asyncio.to_thread(func, *args, **kwargs)
|
309 |
+
|
310 |
+
return wrapper
|
lynxkite-graph-analytics/src/lynxkite_graph_analytics/core.py
CHANGED
@@ -1,5 +1,6 @@
|
|
1 |
"""Graph analytics executor and data types."""
|
2 |
|
|
|
3 |
import os
|
4 |
from lynxkite.core import ops, workspace
|
5 |
import dataclasses
|
@@ -177,10 +178,16 @@ async def execute(ws: workspace.Workspace):
|
|
177 |
# All inputs for this node are ready, we can compute the output.
|
178 |
todo.remove(id)
|
179 |
progress = True
|
180 |
-
_execute_node(node, ws, catalog, outputs)
|
181 |
|
182 |
|
183 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
184 |
params = {**node.data.params}
|
185 |
op = catalog.get(node.data.title)
|
186 |
if not op:
|
@@ -214,6 +221,7 @@ def _execute_node(node, ws, catalog, outputs):
|
|
214 |
# Execute op.
|
215 |
try:
|
216 |
result = op(*inputs, **params)
|
|
|
217 |
except Exception as e:
|
218 |
if os.environ.get("LYNXKITE_LOG_OP_ERRORS"):
|
219 |
traceback.print_exc()
|
|
|
1 |
"""Graph analytics executor and data types."""
|
2 |
|
3 |
+
import inspect
|
4 |
import os
|
5 |
from lynxkite.core import ops, workspace
|
6 |
import dataclasses
|
|
|
178 |
# All inputs for this node are ready, we can compute the output.
|
179 |
todo.remove(id)
|
180 |
progress = True
|
181 |
+
await _execute_node(node, ws, catalog, outputs)
|
182 |
|
183 |
|
184 |
+
async def await_if_needed(obj):
|
185 |
+
if inspect.isawaitable(obj):
|
186 |
+
obj = await obj
|
187 |
+
return obj
|
188 |
+
|
189 |
+
|
190 |
+
async def _execute_node(node, ws, catalog, outputs):
|
191 |
params = {**node.data.params}
|
192 |
op = catalog.get(node.data.title)
|
193 |
if not op:
|
|
|
221 |
# Execute op.
|
222 |
try:
|
223 |
result = op(*inputs, **params)
|
224 |
+
result.output = await await_if_needed(result.output)
|
225 |
except Exception as e:
|
226 |
if os.environ.get("LYNXKITE_LOG_OP_ERRORS"):
|
227 |
traceback.print_exc()
|
lynxkite-graph-analytics/src/lynxkite_graph_analytics/lynxkite_ops.py
CHANGED
@@ -369,6 +369,7 @@ class ModelOutputMapping(pytorch_model_ops.ModelMapping):
|
|
369 |
|
370 |
|
371 |
@op("Train model")
|
|
|
372 |
def train_model(
|
373 |
bundle: core.Bundle,
|
374 |
*,
|
@@ -380,9 +381,11 @@ def train_model(
|
|
380 |
m = bundle.other[model_name].copy()
|
381 |
inputs = pytorch_model_ops.to_tensors(bundle, input_mapping)
|
382 |
t = tqdm(range(epochs), desc="Training model")
|
|
|
383 |
for _ in t:
|
384 |
loss = m.train(inputs)
|
385 |
t.set_postfix({"loss": loss})
|
|
|
386 |
m.trained = True
|
387 |
bundle = bundle.copy()
|
388 |
bundle.other[model_name] = m
|
@@ -390,6 +393,7 @@ def train_model(
|
|
390 |
|
391 |
|
392 |
@op("Model inference")
|
|
|
393 |
def model_inference(
|
394 |
bundle: core.Bundle,
|
395 |
*,
|
|
|
369 |
|
370 |
|
371 |
@op("Train model")
|
372 |
+
@ops.slow
|
373 |
def train_model(
|
374 |
bundle: core.Bundle,
|
375 |
*,
|
|
|
381 |
m = bundle.other[model_name].copy()
|
382 |
inputs = pytorch_model_ops.to_tensors(bundle, input_mapping)
|
383 |
t = tqdm(range(epochs), desc="Training model")
|
384 |
+
losses = []
|
385 |
for _ in t:
|
386 |
loss = m.train(inputs)
|
387 |
t.set_postfix({"loss": loss})
|
388 |
+
losses.append(loss)
|
389 |
m.trained = True
|
390 |
bundle = bundle.copy()
|
391 |
bundle.other[model_name] = m
|
|
|
393 |
|
394 |
|
395 |
@op("Model inference")
|
396 |
+
@ops.slow
|
397 |
def model_inference(
|
398 |
bundle: core.Bundle,
|
399 |
*,
|