maom commited on
Commit
31a39f0
·
verified ·
1 Parent(s): 992d092

add table for associations

Browse files
Files changed (1) hide show
  1. app.py +12 -0
app.py CHANGED
@@ -59,11 +59,13 @@ with col2:
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  # check the user input
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  try:
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  cnag_id_1 = h99_transcript_annotations.loc[h99_transcript_annotations["gene_id"] == gene_id_1]["cnag_id"].values
 
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  except:
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  st.error(f"Unable to locate cnag_id for Gene ID 1: {gene_id_1}, it should be of the form 'CNAG_######'")
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  try:
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  cnag_id_2 = h99_transcript_annotations.loc[h99_transcript_annotations["gene_id"] == gene_id_2]["cnag_id"].values
 
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  except:
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  st.error(f"Unable to locate cnag_id for Gene ID 2: {gene_id_2}, it should be of the form 'CNAG_######'")
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@@ -75,6 +77,16 @@ chart_data = chart_data.merge(
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  right = estimated_expression_meta,
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  on = "run_accession")
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  chart = (
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  alt.Chart(
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  chart_data,
 
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  # check the user input
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  try:
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  cnag_id_1 = h99_transcript_annotations.loc[h99_transcript_annotations["gene_id"] == gene_id_1]["cnag_id"].values
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+ description_1 = h99_transcript_annotations.loc[h99_transcript_annotations["gene_id"] == gene_id_1]["description"].values[0]
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  except:
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  st.error(f"Unable to locate cnag_id for Gene ID 1: {gene_id_1}, it should be of the form 'CNAG_######'")
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  try:
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  cnag_id_2 = h99_transcript_annotations.loc[h99_transcript_annotations["gene_id"] == gene_id_2]["cnag_id"].values
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+ description_2 = h99_transcript_annotations.loc[h99_transcript_annotations["gene_id"] == gene_id_2]["description"].values[0]
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  except:
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  st.error(f"Unable to locate cnag_id for Gene ID 2: {gene_id_2}, it should be of the form 'CNAG_######'")
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  right = estimated_expression_meta,
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  on = "run_accession")
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+ st.markdown("""
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+ ### Gene 1:
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+ * gene_id: [{gene_id_1}](https://fungidb.org/fungidb/app/record/gene/{gene_id_1})
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+ * description: {description_1}
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+
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+ ### Gene 2:
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+ * gene_id: [{gene_id_2}](https://fungidb.org/fungidb/app/record/gene/{gene_id_2})
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+ * description: {description_2}
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+ """)
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+
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  chart = (
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  alt.Chart(
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  chart_data,