maom commited on
Commit
3239333
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verified ·
1 Parent(s): 1109bbe

use a merge with estimated_expression_meta

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Files changed (1) hide show
  1. app.py +4 -6
app.py CHANGED
@@ -70,12 +70,10 @@ except:
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  chart_data = pd.DataFrame({
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  "expression_1": np.log10(estimated_expression.loc[h99_transcript_annotations["gene_id"] == gene_id_1].to_numpy()[0] + 1),
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  "expression_2": np.log10(estimated_expression.loc[h99_transcript_annotations["gene_id"] == gene_id_2].to_numpy()[0] + 1),
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- "run_accession": estimated_expression.columns,
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- "run_accession_meta": estimated_expression_meta["run_accession"],
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- "study_accession": estimated_expression_meta["study_accession"]})
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-
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- # DEBUG
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- print(f"run_ids are equal: {sum(chart_data['run_accession'] == chart_data['run_accession_meta'])}")
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  chart = (
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  alt.Chart(chart_data)
 
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  chart_data = pd.DataFrame({
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  "expression_1": np.log10(estimated_expression.loc[h99_transcript_annotations["gene_id"] == gene_id_1].to_numpy()[0] + 1),
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  "expression_2": np.log10(estimated_expression.loc[h99_transcript_annotations["gene_id"] == gene_id_2].to_numpy()[0] + 1),
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+ "run_accession": estimated_expression.columns})
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+ chart_data.merge(
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+ right = estimated_expression_meta,
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+ on = "run_accession")
 
 
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  chart = (
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  alt.Chart(chart_data)