Update app.py
Browse files
app.py
CHANGED
@@ -7,6 +7,8 @@ from fastapi.middleware.cors import CORSMiddleware
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from mcp.orchestrator import orchestrate_search, answer_ai_question
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from mcp.schemas import UnifiedSearchInput, UnifiedSearchResult
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from pathlib import Path
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import asyncio
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ROOT_DIR = Path(__file__).resolve().parent
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@@ -36,6 +38,23 @@ async def unified_search_endpoint(data: UnifiedSearchInput):
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async def ask_ai_endpoint(question: str, context: str = ""):
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return await answer_ai_question(question, context)
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# --- STREAMLIT UI ---
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def render_ui():
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@@ -61,37 +80,60 @@ def render_ui():
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st.subheader("π Unified Semantic Search")
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query = st.text_input("Enter your biomedical research question:", placeholder="e.g. New treatments for glioblastoma using CRISPR")
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if st.button("Run Search π"):
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with st.spinner("Thinking... Gathering and analyzing data across 5 systems..."):
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results = asyncio.run(orchestrate_search(query))
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st.success("Search complete! π")
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# Follow-up AI Q&A
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st.markdown("---")
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from mcp.orchestrator import orchestrate_search, answer_ai_question
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from mcp.schemas import UnifiedSearchInput, UnifiedSearchResult
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from pathlib import Path
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import pandas as pd
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from fpdf import FPDF
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import asyncio
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ROOT_DIR = Path(__file__).resolve().parent
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async def ask_ai_endpoint(question: str, context: str = ""):
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return await answer_ai_question(question, context)
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# --- PDF Export Utility ---
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def generate_pdf(papers):
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pdf = FPDF()
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pdf.add_page()
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pdf.set_font("Arial", size=12)
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pdf.cell(200, 10, txt="MedGenesis AI - Search Results", ln=True, align='C')
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pdf.ln(10)
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for i, paper in enumerate(papers, 1):
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pdf.set_font("Arial", style="B", size=12)
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pdf.multi_cell(0, 10, f"{i}. {paper['title']}")
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pdf.set_font("Arial", style="", size=10)
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pdf.multi_cell(0, 8, f"Authors: {paper['authors']}\nLink: {paper['link']}\nSummary: {paper['summary']}\n")
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pdf.ln(2)
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pdf_out = pdf.output(dest='S').encode('latin-1')
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return pdf_out
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# --- STREAMLIT UI ---
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def render_ui():
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st.subheader("π Unified Semantic Search")
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query = st.text_input("Enter your biomedical research question:", placeholder="e.g. New treatments for glioblastoma using CRISPR")
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results = None
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if st.button("Run Search π"):
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with st.spinner("Thinking... Gathering and analyzing data across 5 systems..."):
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results = asyncio.run(orchestrate_search(query))
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st.success("Search complete! π")
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if results:
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# Papers
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st.markdown("### π Most Relevant Papers")
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for i, paper in enumerate(results["papers"], 1):
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st.markdown(f"**{i}. [{paper['title']}]({paper['link']})** \n*{paper['authors']}* ({paper['source']})")
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st.markdown(f"<div style='font-size: 0.9em; color: gray'>{paper['summary']}</div>", unsafe_allow_html=True)
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# Export as CSV
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if results["papers"]:
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df = pd.DataFrame(results["papers"])
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csv = df.to_csv(index=False)
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st.download_button(
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label="π₯ Download results as CSV",
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data=csv,
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file_name="medgenesis_results.csv",
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mime="text/csv",
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)
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# Export as PDF
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if results["papers"]:
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pdf_bytes = generate_pdf(results["papers"])
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st.download_button(
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label="π Download results as PDF",
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data=pdf_bytes,
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file_name="medgenesis_results.pdf",
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mime="application/pdf",
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)
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# UMLS Concepts
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st.markdown("### π§ Biomedical Concept Enrichment (UMLS)")
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for concept in results["umls"]:
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if concept["cui"]:
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st.markdown(f"πΉ **{concept['name']}** (CUI: `{concept['cui']}`): {concept['definition'] or 'No definition available'}")
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# Drug Safety
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st.markdown("### π Drug Safety Insights (OpenFDA)")
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for drug_report in results["drug_safety"]:
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if drug_report:
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st.json(drug_report)
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# AI Summary
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st.markdown("### π€ AI-Powered Summary")
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st.info(results["ai_summary"])
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# Suggested Reading
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st.markdown("### π Suggested Links")
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for link in results["suggested_reading"]:
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st.write(f"- {link}")
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# Follow-up AI Q&A
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st.markdown("---")
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