import requests from config.settings import settings from services.logger import app_logger # This is a very simplified example. Real UMLS/BioPortal integration is complex. UMLS_BASE_URL = "https://uts-ws.nlm.nih.gov/rest" # Example, check actual UMLS REST API BIOPORTAL_BASE_URL = "http://data.bioontology.org" def search_umls_term(term: str) -> dict: if not settings.UMLS_API_KEY: app_logger.warning("UMLS_API_KEY not set. UMLS search will be mocked.") return {"results": [{"term": term, "cui": "C0000000", "definition": "Mocked UMLS definition."}]} # This is a placeholder for a real UMLS API call. # You'd need to handle authentication (e.g., Ticket Granting Ticket) and parsing. # Example endpoint (hypothetical): # endpoint = f"{UMLS_BASE_URL}/search/current?string={term}&apiKey={settings.UMLS_API_KEY}" # For simplicity, we'll mock. try: # params = {'string': term, 'apiKey': settings.UMLS_API_KEY, 'pageNumber': 1, 'pageSize': 5} # response = requests.get(f"{UMLS_BASE_URL}/search/current", params=params) # Fictional endpoint # response.raise_for_status() # data = response.json() # return data.get("result", {}).get("results", []) return {"results": [{"name": f"Mocked UMLS result for {term}"}]} # Simplified mock except requests.RequestException as e: app_logger.error(f"UMLS API request failed: {e}") return {"error": str(e)} except Exception as e: app_logger.error(f"Error processing UMLS search for '{term}': {e}") return {"error": f"Unexpected error during UMLS search: {str(e)}"} def search_bioportal_term(term: str, ontology: str = "SNOMEDCT") -> dict: if not settings.BIOPORTAL_API_KEY: app_logger.warning("BIOPORTAL_API_KEY not set. BioPortal search will be mocked.") return {"collection": [{"prefLabel": term, "cui": ["C0000000"], "definition": ["Mocked BioPortal definition."]}]} headers = {"Authorization": f"apikey token={settings.BIOPORTAL_API_KEY}"} params = {"q": term, "ontologies": ontology, "include": "prefLabel,synonym,definition,cui"} try: response = requests.get(f"{BIOPORTAL_BASE_URL}/search", params=params, headers=headers) response.raise_for_status() return response.json() except requests.RequestException as e: app_logger.error(f"BioPortal API request failed: {e}") return {"error": str(e)} except Exception as e: app_logger.error(f"Error processing BioPortal search for '{term}': {e}") return {"error": f"Unexpected error during BioPortal search: {str(e)}"}