app_.py

import gradio as gr
import pandas as pd
import umap
import matplotlib.pyplot as plt
import os
import tempfile
import scanpy as sc
import argparse
import subprocess
from io import BytesIO
from evaluate import AnndataProcessor
from accelerate import Accelerator
from huggingface_hub import hf_hub_download


def main(input_file_path, species):
    
    # clone and cd into UCE repo
    os.system('git clone https://github.com/minwoosun/UCE.git')
    os.chdir('UCE')

    #  python eval_single_anndata.py --adata_path "./data/10k_pbmcs_proc.h5ad" --dir "./" --model_loc "minwoosun/uce-100m"
    script_name = "eval_single_anndata.py"
    args = ["--adata_path", input_file_path, "--dir", "./", "--model_loc", "minwoosun/uce-100m"]
    command = ["python", script_name] + args
    
    try:
        result = subprocess.run(command, capture_output=True, text=True, check=True)
        print(result.stdout)
        print(result.stderr)
    except subprocess.CalledProcessError as e:
        print(f"Error executing command: {e}")

        
   
    

if __name__ == "__main__":