wzkariampuzha commited on
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dcbde5e
1 Parent(s): f51313e

Update epi_pipeline.py

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  1. epi_pipeline.py +2 -2
epi_pipeline.py CHANGED
@@ -73,7 +73,7 @@ def search_getAbs(searchterm_list:Union[List[str],List[int],str], maxResults:int
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  query = term[:-3]
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  ## get pmid results from searching for disease name through PubMed API
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- url = 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term='+query+"&retmax="+str(int(maxResults/len(searchterm_list)))
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  r = requests.get(url)
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  root = ET.fromstring(r.content)
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@@ -171,7 +171,7 @@ def streamlit_getAbs(searchterm_list:Union[List[str],List[int],str], maxResults:
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  term += word + '%20'
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  query = term[:-3]
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  #dividing by the len( of the search_ter
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- url = 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term='+query+"&retmax="+str(int(maxResults/len(searchterm_list)))
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  r = requests.get(url)
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  root = ET.fromstring(r.content)
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  query = term[:-3]
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  ## get pmid results from searching for disease name through PubMed API
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+ url = 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term='+query#+"&retmax="+str(int(maxResults/len(searchterm_list)))
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  r = requests.get(url)
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  root = ET.fromstring(r.content)
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  term += word + '%20'
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  query = term[:-3]
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  #dividing by the len( of the search_ter
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+ url = 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term='+query#+"&retmax="+str(int(maxResults/len(searchterm_list)))
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  r = requests.get(url)
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  root = ET.fromstring(r.content)
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