Add application files

app.py

@@ -12,32 +12,32 @@ demo.launch()
 '''
 def greet(name1, name2):
     # Storing each input in a variable, you can process or save them as you like
-    str1 = name1 ## openai
-    str2 = "213e22ba-4c3b-402b-bd36-6e9d4e86b1b5"   #bioportal
-    str3 = "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"   # huggingface
-    str4 = name2
+    str1_openai = name1 ## openai
+    str2_bioportal = "213e22ba-4c3b-402b-bd36-6e9d4e86b1b5"   #bioportal
+    str3_huggingface = "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"   # huggingface
+    str4_input = name2
     
     
     with open('abstractsave.txt', 'w') as f:
-        f.write(name2)
+        f.write(str4_input)
     
-#     def run_command(command):
-#         result = subprocess.run(command, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True)
+    def run_command(command):
+        result = subprocess.run(command, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True)
 
-#         output_string = result.stdout
-#         error_string = result.stderr
+        output_string = result.stdout
+        error_string = result.stderr
 
-#         return output_string, error_string
+        return output_string, error_string
 
-######     output_string1, error_string1= run_command("pip install optogpt")
-#     output_string1, error_string1 = run_command("curl -sSL https://install.python-poetry.org | python3 -")
-#     output_string2, error_string2= run_command(f"poetry run runoak set-apikey -e openai {str1}")
-#     run_command(f"poetry run runoak set-apikey -e bioportal {str2}")
-#     run_command(f"poetry run runoak set-apikey -e hfhub-key {str3}")
+#####     output_string1, error_string1= run_command("pip install optogpt")
+    output_string1, error_string1 = run_command("curl -sSL https://install.python-poetry.org | python3 -")
+    output_string2, error_string2 = run_command(f"poetry run runoak set-apikey -e openai {str1_openai}")
+    run_command(f"poetry run runoak set-apikey -e bioportal {str2_bioportal}")
+    run_command(f"poetry run runoak set-apikey -e hfhub-key {str3_huggingface}")
 #     output = run_command(f"ontogpt extract -t gocam.GoCamAnnotations -i ./abstract.txt")
-#     output = run_command(f"cancerontogpt extract -t cancer.CancerAnnotations -i ./abstractsave.txt")"""
+    output = run_command(f"cancerontogpt extract -t cancer.CancerAnnotations -i ./abstractsave.txt")
 
-#     output_string1, error_string1=run_command("poetry")# ontogpt")
+####     output_string1, error_string1=run_command("poetry")# ontogpt")
 
     
 #     return location
@@ -45,7 +45,7 @@ def greet(name1, name2):
 #     return f"Inputs received: {str1} \n, {str2}, {str3}, {str4}, '--------------',   '--------------', {output_string1},{error_string1},{output_string2},{error_string2},{output}"
 #     #     return location
     # For the purpose of this example, I'm just returning the values concatenated
-    return f"{str4}"
+    return f"{output}"
 
 # Define 5 text input boxes with labels
 input_boxes = [