Add application files

app.py

@@ -38,6 +38,20 @@ def greet(name1, name2):
     output = run_command(f"cancerontogpt extract -t cancer.CancerAnnotations -i ./abstractsave.txt")
     
     output = output[0].replace('\\n', '\n')
+    
+    # Find the positions of the start and end markers
+    start_marker = "raw_completion_output: |-"
+    end_marker = "prompt: "
+    start_position = output.find(start_marker)
+    end_position = output.find(end_marker)
+
+    # Extract the text between the start and end positions
+    output = output[start_position + len(start_marker):end_position].strip()
+
+    # Output the extracted text
+    output
+
+
 
 ####     output_string1, error_string1=run_command("poetry")# ontogpt")