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README.md
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# LLMGeneLinker (LGL): a Fine-Tuned SciBERT Model for Named Entity Recognition
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LLMGeneLinker uses a domain-specific transformer like SciBERT finetuned on AllenAI drug dataset, BC5CDR disease, NCBI disease, DrugProt and GeneTAG datasets. The resulting SciBERT model performs Named Entity Recognition to tag drug, protein, gene, diseases in input text. Sentence embedding of SciBERT is then fed into BERT
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language:
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- en
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tags:
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- Named Entity Recognition
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- SciBERT
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- Drug-Target interaction
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- Drugs
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- Genes
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- Proteins
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- Medical
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datasets:
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- bigbio/ncbi_disease
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- bigbio/bc5cdr
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- bigbio/genetag
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- bigbio/drugprot
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- allenai/drug-combo-extraction
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# LLMGeneLinker (LGL): a Fine-Tuned SciBERT Model for Named Entity Recognition
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LLMGeneLinker uses a domain-specific transformer like SciBERT finetuned on AllenAI drug dataset, BC5CDR disease, NCBI disease, DrugProt and GeneTAG datasets. The resulting SciBERT model performs Named Entity Recognition to tag drug, protein, gene, diseases in input text. Sentence embedding of SciBERT is then fed into BERT
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