Update distribution_prediction table

data_link/distribution_prediction.csv

@@ -1,21 +1,21 @@
-Model,Pairwise RMSD,*RMSF,Pearson r on Pairwise RMSD ↑,Pearson r on *Global RMSF ↑,Pearson r on *Per target RMSF ↑,*RMWD ↓,MD PCA W2 ↓,Joint PCA W2 ↓,PC sim > 0.5% ↑,Weak contacts J ↑,Transient contacts J ↑,*Exposed residue J ↑,*Exposed MI matrix ρ ↑,CA break % ↓,CA clash % ↓,PepBond break % ↓
-MD iid,2.76,1.63,0.96,0.97,0.99,0.71,0.76,0.7,93.9,0.9,0.8,0.93,0.56,0,0.1,3.4
-MD 2.5 ns,1.54,0.98,0.89,0.85,0.85,2.21,1.57,1.93,36.6,0.62,0.45,0.64,0.24,0,0.1,3.4
-<a href="https://github.com/bjing2016/EigenFold"> EigenFold </a>,5.96,NaN,-0.04,NaN,NaN,NaN,2.35,7.96,12.2,0.36,0.18,NaN,NaN,0.7,9.6,NaN
-<a href="https://github.com/delalamo/af2_conformations"> MSA-depth256</a>,0.84,0.53,0.25,0.34,0.59,3.63,1.83,2.9,29.3,0.3,0.28,0.33,0.06,0,0.2,5.9
-<a href="https://github.com/delalamo/af2_conformations"> MSA-depth64</a>,2.03,1.51,0.24,0.3,0.57,4,1.87,3.32,18.3,0.38,0.27,0.38,0.12,0,0.2,8.4
-<a href="https://github.com/delalamo/af2_conformations"> MSA-depth32</a>,5.71,7.96,0.07,0.17,0.53,6.12,2.5,5.67,17.1,0.39,0.24,0.36,0.15,0,0.5,13
-<a href="https://github.com/lujiarui/Str2Str">Str2Str-ODE (Tmax=0.1)</a>,1.66,NaN,0.13,NaN,NaN,NaN,2.12,4.42,6.1,0.42,0.17,NaN,NaN,0,0.1,13.7
-<a href="https://github.com/lujiarui/Str2Str">Str2Str-ODE (Tmax=0.3)</a>,3.15,NaN,0.12,NaN,NaN,NaN,2.23,4.75,9.8,0.41,0.17,NaN,NaN,0,0.1,14.8
-<a href="https://github.com/lujiarui/Str2Str">Str2Str-SDE (Tmax=0.1)</a>,4.74,NaN,0.1,NaN,NaN,NaN,2.54,8.84,9.8,0.4,0.13,NaN,NaN,1.6,0.2,23
-<a href="https://github.com/lujiarui/Str2Str">Str2Str-SDE (Tmax=0.3)</a>,7.54,NaN,0,NaN,NaN,NaN,3.29,12.28,7.3,0.35,0.13,NaN,NaN,1.5,0.2,21.4
-<a href="https://github.com/bjing2016/alphaflow">AlphaFlow-PDB</a>,2.58,1.2,0.27,0.46,0.81,2.96,1.66,2.6,37.8,0.44,0.33,0.42,0.18,0,0.2,6.6
-<a href="https://github.com/bjing2016/alphaflow">AlphaFlow-MD</a>,2.88,1.63,0.53,0.66,0.85,2.68,1.53,2.28,39,0.57,0.38,0.5,0.24,0,0.2,21.7
-<a href="https://github.com/bjing2016/alphaflow">ESMFlow-PDB</a>,3,1.68,0.14,0.27,0.71,4.2,1.77,3.54,28,0.42,0.29,0.41,0.16,0,0.6,5.4
-<a href="https://github.com/bjing2016/alphaflow">ESMFlow-MD</a>,3.34,2.13,0.19,0.3,0.76,3.63,1.54,3.15,25.6,0.51,0.33,0.47,0.21,0,0.3,10.9
-<a href="https://github.com/bytedance/ConfDiff">ConfDiff-Open-ClsFree</a>,3.68,2.12,0.4,0.54,0.83,2.92,1.5,2.54,46.3,0.54,0.33,0.47,0.21,0,1.2,5.7
-<a href="https://github.com/bytedance/ConfDiff">ConfDiff-Open-PDB</a>,2.9,1.43,0.38,0.51,0.82,2.97,1.57,2.51,34.1,0.47,0.34,0.43,0.18,0,0.9,5.7
-<a href="https://github.com/bytedance/ConfDiff">ConfDiff-Open-MD</a>,3.43,2.21,0.59,0.67,0.85,2.76,1.44,2.25,35.4,0.59,0.36,0.5,0.24,0,0.8,6.3
-<a href="https://github.com/bytedance/ConfDiff">ConfDiff-ESM-ClsFree</a>,4.04,2.84,0.31,0.43,0.82,3.82,1.72,3.06,37.8,0.54,0.31,0.47,0.18,0,1.8,4.3
-<a href="https://github.com/bytedance/ConfDiff">ConfDiff-ESM-PDB</a>,3.42,2.06,0.29,0.4,0.8,3.67,1.7,3.17,34.1,0.48,0.31,0.42,0.18,0,1.6,3.9
-<a href="https://github.com/bytedance/ConfDiff">ConfDiff-ESM-MD</a>,3.91,2.79,0.35,0.48,0.82,3.67,1.66,2.89,39,0.56,0.34,0.48,0.23,0,1.5,4
+Model,Pairwise RMSD,RMSF,Pearson r on Pairwise RMSD ↑,Pearson r on Global RMSF ↑,Pearson r on Per target RMSF ↑,RMWD ↓,MD PCA W2 ↓,Joint PCA W2 ↓,PC sim > 0.5% ↑,Weak contacts J ↑,Transient contacts J ↑,Exposed residue J ↑,Exposed MI matrix ρ ↑,CA clash % ↓,CA break % ↓,PepBond break % ↓
+MD iid,2.76,1.63,0.96,0.97,0.99,0.67,0.73,0.71,93.9,0.90,0.80,0.93,0.56,0.0,0.0,3.4
+MD 2.5ns,1.54,0.98,0.89,0.85,0.85,2.22,1.55,1.89,36.6,0.62,0.45,0.64,0.25,0.0,0.0,3.4
+"<a href=""https://github.com/bjing2016/EigenFold"">EigenFold</a>",5.96,NaN,-0.03,NaN,NaN,NaN,2.31,7.96,12.2,0.36,0.19,NaN,NaN,5.6,0.4,NaN
+"<a href=""https://github.com/delalamo/af2_conformations"">MSA-depth256</a>",0.83,0.53,0.25,0.34,0.59,3.60,1.79,2.91,29.3,0.30,0.29,0.36,0.06,0.0,0.0,5.5
+"<a href=""https://github.com/delalamo/af2_conformations"">MSA-depth64</a>",2.03,1.51,0.25,0.30,0.57,4.00,1.94,3.34,18.3,0.38,0.28,0.40,0.16,0.0,0.0,7.6
+"<a href=""https://github.com/delalamo/af2_conformations"">MSA-depth32</a>",5.70,7.96,0.08,0.17,0.53,6.09,2.56,5.70,17.1,0.40,0.24,0.40,0.19,0.1,0.0,11.2
+"<a href=""https://github.com/lujiarui/Str2Str"">Str2Str-ODE (Tmax=0.1)</a>",1.66,NaN,0.13,NaN,NaN,NaN,2.14,4.39,6.1,0.42,0.18,NaN,NaN,0.0,0.0,12.1
+"<a href=""https://github.com/lujiarui/Str2Str"">Str2Str-ODE (Tmax=0.3)</a>",3.15,NaN,0.13,NaN,NaN,NaN,2.19,4.80,9.8,0.42,0.17,NaN,NaN,0.0,0.0,13.2
+"<a href=""https://github.com/lujiarui/Str2Str"">Str2Str-SDE (Tmax=0.1)</a>",4.74,NaN,0.11,NaN,NaN,NaN,2.54,8.82,9.8,0.40,0.13,NaN,NaN,0.1,1.6,21.9
+"<a href=""https://github.com/lujiarui/Str2Str"">Str2Str-SDE (Tmax=0.3)</a>",7.54,NaN,0.01,NaN,NaN,NaN,3.24,12.28,7.3,0.36,0.13,NaN,NaN,0.2,1.5,20.2
+"<a href=""https://github.com/bjing2016/alphaflow"">AlphaFlow-PDB</a>",2.58,1.20,0.27,0.46,0.81,2.97,1.61,2.61,37.8,0.45,0.36,0.50,0.25,0.1,0.0,6.7
+"<a href=""https://github.com/bjing2016/alphaflow"">AlphaFlow-MD</a>",2.87,1.63,0.53,0.66,0.85,2.64,1.55,2.29,39.0,0.62,0.41,0.69,0.35,0.0,0.0,22.2
+"<a href=""https://github.com/bjing2016/alphaflow"">ESMFlow-PDB</a>",2.99,1.68,0.14,0.27,0.71,4.15,1.87,3.61,28.0,0.42,0.30,0.46,0.21,0.2,0.0,5.1
+"<a href=""https://github.com/bjing2016/alphaflow"">ESMFlow-MD</a>",3.33,2.13,0.19,0.30,0.76,3.61,1.66,3.25,25.6,0.55,0.34,0.57,0.29,0.1,0.0,10.9
+"<a href=""https://github.com/bytedance/ConfDiff"">ConfDiff-Open-ClsFree</a>",3.68,2.12,0.39,0.54,0.83,2.91,1.54,2.46,46.3,0.58,0.36,0.60,0.28,0.8,0.0,5.7
+"<a href=""https://github.com/bytedance/ConfDiff"">ConfDiff-Open-PDB</a>",2.89,1.43,0.38,0.51,0.82,2.96,1.59,2.46,34.1,0.50,0.36,0.54,0.25,0.5,0.0,5.6
+"<a href=""https://github.com/bytedance/ConfDiff"">ConfDiff-Open-MD</a>",3.43,2.21,0.59,0.67,0.85,2.75,1.41,2.27,35.4,0.63,0.39,0.65,0.33,0.5,0.0,6.5
+"<a href=""https://github.com/bytedance/ConfDiff"">ConfDiff-ESM-ClsFree</a>",4.04,2.84,0.31,0.43,0.82,3.78,1.73,3.07,37.8,0.57,0.34,0.59,0.23,0.9,0.0,4.3
+"<a href=""https://github.com/bytedance/ConfDiff"">ConfDiff-ESM-PDB</a>",3.42,2.06,0.29,0.40,0.80,3.62,1.68,3.13,34.1,0.50,0.33,0.50,0.24,0.5,0.0,4.0
+"<a href=""https://github.com/bytedance/ConfDiff"">ConfDiff-ESM-MD</a>",3.90,2.79,0.35,0.48,0.82,3.62,1.73,3.00,37.8,0.61,0.36,0.61,0.31,0.4,0.0,4.3

data_rank/distribution_prediction.csv

@@ -1,2 +1,2 @@
-Model,Pairwise RMSD,*RMSF,Pearson r on Pairwise RMSD ↑,Pearson r on *Global RMSF ↑,Pearson r on *Per target RMSF ↑,*RMWD ↓,MD PCA W2 ↓,Joint PCA W2 ↓,PC sim > 0.5% ↑,Weak contacts J ↑,Transient contacts J ↑,*Exposed residue J ↑,*Exposed MI matrix ρ ↑,CA break % ↓,CA clash % ↓,PepBond break % ↓
-0,0,0,-1,-1,-1,1,1,1,-1,-1,-1,-1,-1,0,1,1
+Model,Pairwise RMSD,RMSF,Pearson r on Pairwise RMSD ↑,Pearson r on Global RMSF ↑,Pearson r on Per target RMSF ↑,RMWD ↓,MD PCA W2 ↓,Joint PCA W2 ↓,PC sim > 0.5% ↑,Weak contacts J ↑,Transient contacts J ↑,Exposed residue J ↑,Exposed MI matrix ρ ↑,CA clash % ↓,CA break % ↓,PepBond break % ↓
+0,0,0,-1,-1,-1,1,1,1,-1,-1,-1,-1,-1,1,0,1