
Add count of category and PMC IDs to data output in extract_arxiv_data and extract_pmc_data functions
5a2457c
import json | |
import random | |
from bs4 import BeautifulSoup | |
import utils | |
def fetch_new_page(category): | |
url = f'https://arxiv.org/list/{category}/new' | |
return utils.fetch_page(url) | |
def fetch_recent_page(category): | |
url = f'https://arxiv.org/list/{category}/recent' | |
return utils.fetch_page(url) | |
def extract_new_data(category): | |
paper_ids = [] | |
page_content = fetch_new_page(category) | |
lists = BeautifulSoup(page_content, 'html.parser').find_all('dl') | |
for list in lists: | |
papers = list.find_all('dt') | |
paper_contents = list.find_all('dd') | |
titles = [paper_content.find('div', class_='list-title').text.strip().split('Title:')[-1].strip() for paper_content in paper_contents] | |
for paper, title in zip(papers, titles): | |
if not utils.verify_simple_title(title): | |
continue | |
paper_link = paper.find('a', href=True) | |
if paper_link: | |
paper_id = paper_link.text.strip().split(':')[1] | |
paper_ids.append(paper_id) | |
return paper_ids | |
def extract_recent_data(category): | |
paper_ids = [] | |
page_content = fetch_recent_page(category) | |
lists = BeautifulSoup(page_content, 'html.parser').find_all('dl') | |
for list in lists: | |
papers = list.find_all('dt') | |
for paper in papers: | |
paper_link = paper.find('a', href=True) | |
if paper_link: | |
paper_id = paper_link.text.strip().split(':')[1] | |
paper_ids.append(paper_id) | |
return paper_ids | |
def extract_data(category): | |
all_ids = set() | |
new_data = extract_new_data(category) | |
recent_data = extract_recent_data(category) | |
combined_data = new_data + recent_data | |
for paper_id in combined_data: | |
if not utils.check_data_in_file(paper_id, 'arxiv.txt'): | |
utils.write_data_to_file(paper_id, 'arxiv.txt') | |
all_ids.add(paper_id) | |
if len(all_ids) >= 4: | |
break | |
return list(all_ids) | |
def extract_arxiv_data(): | |
if not utils.download_datafile('arxiv.txt'): | |
raise Exception("Failed to download datafile") | |
categories = { | |
"Astrophysics": ["astro-ph"], | |
"Condensed Matter": ["cond-mat"], | |
"General Relativity and Quantum Cosmology": ["gr-qc"], | |
"High Energy Physics": ["hep-ex", "hep-lat", "hep-ph", "hep-th"], | |
"Mathematical Physics": ["math-ph"], | |
"Nonlinear Sciences": ["nlin"], | |
"Nuclear Experiment": ["nucl-ex"], | |
"Nuclear Theory": ["nucl-th"], | |
"Physics": ["physics"], | |
"Quantum Physics": ["quant-ph"], | |
"Mathematics": ["math"], | |
"Computer Science": ["cs"], | |
"Quantitative Biology": ["q-bio"], | |
"Quantitative Finance": ["q-fin"], | |
"Statistics": ["stat"], | |
"Electrical Engineering and Systems Science": ["eess"], | |
"Economics": ["econ"] | |
} | |
data = {} | |
used_ids = set() | |
for category, subcategories in categories.items(): | |
category_ids = set() | |
for subcategory in subcategories: | |
ids = extract_data(subcategory) | |
for paper_id in ids: | |
if paper_id not in used_ids: | |
category_ids.add(paper_id) | |
used_ids.add(paper_id) | |
if len(category_ids) == 4: | |
break | |
if len(category_ids) == 4: | |
break | |
while len(category_ids) < 4: | |
category_ids.add(random.choice(list(used_ids))) | |
data[category] = {"ids": list(category_ids), "count": len(category_ids)} | |
if not utils.upload_datafile('arxiv.txt'): | |
raise Exception("Failed to upload datafile") | |
return json.dumps(data, indent=4, ensure_ascii=False) | |
if __name__ == '__main__': | |
data = extract_arxiv_data() | |
with open('arxiv_data.json', 'w') as f: | |
f.write(data) | |