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import logging | |
import os.path | |
import gradio as gr | |
import run_utils | |
def run_wrapper(protein_file, ligand_file, *args, **kwargs) -> str: | |
return run_utils.run_cli_command(protein_file.name, ligand_file.name, | |
*args, **kwargs) | |
def run(): | |
iface = gr.Interface( | |
fn=run_wrapper, | |
inputs=[ | |
gr.File(label="Protein PDB", file_types=[".pdb"]), | |
gr.File(label="Ligand SDF", file_types=[".sdf"]), | |
gr.Number( | |
label="Samples Per Complex", | |
value=1, | |
minimum=1, | |
maximum=100, | |
precision=0, | |
), | |
gr.Checkbox(label="Keep Local Structures", value=True), | |
gr.Checkbox(label="Save Visualisation", value=True), | |
], | |
outputs=gr.File(label="Result"), | |
) | |
iface.launch(server_name="0.0.0.0", server_port=7860, share=False) | |
def set_env_variables(): | |
if "DiffDock-Pocket-Dir" not in os.environ: | |
work_dir = os.path.abspath(os.path.join("../DiffDock-Pocket")) | |
if os.path.exists(work_dir): | |
os.environ["DiffDock-Pocket-Dir"] = work_dir | |
else: | |
raise ValueError(f"DiffDock-Pocket-Dir {work_dir} not found") | |
if "LOG_LEVEL" not in os.environ: | |
os.environ["LOG_LEVEL"] = "INFO" | |
if __name__ == "__main__": | |
set_env_variables() | |
run_utils.configure_logging() | |
run() | |