import spacy spacy.prefer_gpu() from spacy.cli.download import download from spacy.matcher import Matcher import numpy as np import gradio as gr import pandas as pd from typing import List, Type from datetime import datetime from search_funcs.helper_functions import create_highlighted_excel_wb PandasDataFrame = Type[pd.DataFrame] today_rev = datetime.now().strftime("%Y%m%d") # Load the SpaCy model #os.system("python -m spacy download en_core_web_sm") try: import en_core_web_sm nlp = en_core_web_sm.load() print("Successfully imported spaCy model") #nlp = spacy.load("en_core_web_sm") #print(nlp._path) except: download("en_core_web_sm") nlp = spacy.load("en_core_web_sm") print("Successfully imported spaCy model") def spacy_fuzzy_search(string_query:str, df_list: List[str], original_data: PandasDataFrame, text_column:str, in_join_file: PandasDataFrame, search_df_join_column:str, in_join_column:str, no_spelling_mistakes:int = 1, progress=gr.Progress(track_tqdm=True)): ''' Conduct fuzzy match on a list of data.''' if len(df_list) > 10000: out_message = "Your data has more than 10,000 rows and will take more than three minutes to do a fuzzy search. Please try keyword or semantic search for data of this size." return out_message, None query = nlp(string_query) tokenised_query = [token.text for token in query] print(tokenised_query) spelling_mistakes_fuzzy_pattern = "FUZZY" + str(no_spelling_mistakes) # %% if len(tokenised_query) > 1: pattern_lemma = [{"LEMMA": {"IN": tokenised_query}}] pattern_fuzz = [{"TEXT": {spelling_mistakes_fuzzy_pattern: {"IN": tokenised_query}}}] else: pattern_lemma = [{"LEMMA": tokenised_query[0]}] pattern_fuzz = [{"TEXT": {spelling_mistakes_fuzzy_pattern: tokenised_query[0]}}] # %% matcher = Matcher(nlp.vocab) # %% matcher.add(string_query, [pattern_fuzz]) matcher.add(string_query, [pattern_lemma]) # %% batch_size = 256 docs = nlp.pipe(df_list, batch_size=batch_size) # %% all_matches = [] # Get number of matches per doc for doc in progress.tqdm(docs, desc = "Searching text", unit = "rows"): matches = matcher(doc) match_count = len(matches) all_matches.append(match_count) print("Search complete") ## Get document lengths lengths = [] for element in df_list: lengths.append(len(element)) # Score is number of matches divided by length of document match_scores = (np.array(all_matches)/np.array(lengths)).tolist() # Prepare results and export results_df = pd.DataFrame(data={"index": list(range(len(df_list))), "search_text": df_list, "search_score_abs": match_scores}) results_df['search_score_abs'] = abs(round(results_df['search_score_abs']*100, 2)) results_df_out = results_df[['index', 'search_text', 'search_score_abs']].merge(original_data,left_on="index", right_index=True, how="left") # Keep only results with at least one match results_df_out = results_df_out.loc[results_df["search_score_abs"] > 0, :] # Join on additional files if not in_join_file.empty: progress(0.5, desc = "Joining on additional data file") join_df = in_join_file join_df[in_join_column] = join_df[in_join_column].astype(str).str.replace("\.0$","", regex=True) results_df_out[search_df_join_column] = results_df_out[search_df_join_column].astype(str).str.replace("\.0$","", regex=True) # Duplicates dropped so as not to expand out dataframe join_df = join_df.drop_duplicates(in_join_column) results_df_out = results_df_out.merge(join_df,left_on=search_df_join_column, right_on=in_join_column, how="left", suffixes=('','_y'))#.drop(in_join_column, axis=1) # Reorder results by score results_df_out = results_df_out.sort_values('search_score_abs', ascending=False) # Out file query_str_file = ("_").join(tokenised_query) results_df_name = "keyword_search_result_" + today_rev + "_" + query_str_file + ".xlsx" print("Saving search file output") progress(0.7, desc = "Saving search output to file") #results_df_out.to_excel(results_df_name, index= None) # Highlight found text and save to file results_df_out_wb = create_highlighted_excel_wb(results_df_out, free_text_query, "search_text") results_df_out_wb.save(results_df_name) results_first_text = results_df_out[text_column].iloc[0] print("Returning results") return results_first_text, results_df_name