Update README.md
Browse files
README.md
CHANGED
@@ -7,4 +7,77 @@ sdk: static
|
|
7 |
pinned: false
|
8 |
---
|
9 |
|
10 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
7 |
pinned: false
|
8 |
---
|
9 |
|
10 |
+
**Github repository:** https://github.com/Franblueee/torchmil
|
11 |
+
|
12 |
+
[**torchmil**](https://github.com/Franblueee/torchmil) is a [PyTorch](https://pytorch.org/)-based library for deep Multiple Instance Learning (MIL).
|
13 |
+
It provides a simple, flexible, and extensible framework for working with MIL models and data.
|
14 |
+
|
15 |
+
It includes:
|
16 |
+
|
17 |
+
- A collection of popular [MIL models](https://franblueee.github.io/torchmil/api/models/).
|
18 |
+
- Different [PyTorch modules](https://franblueee.github.io/torchmil/api/nn/) frequently used in MIL models.
|
19 |
+
- Handy tools to deal with [MIL data](https://franblueee.github.io/torchmil/api/data/).
|
20 |
+
- A collection of popular [MIL datasets](https://franblueee.github.io/torchmil/api/datasets/).
|
21 |
+
|
22 |
+
## Installation
|
23 |
+
|
24 |
+
```bash
|
25 |
+
pip install torchmil
|
26 |
+
```
|
27 |
+
|
28 |
+
## Quick start
|
29 |
+
|
30 |
+
You can load a MIL dataset and train a MIL model in just a few lines of code:
|
31 |
+
|
32 |
+
```python
|
33 |
+
from torchmil.datasets import Camelyon16MIL
|
34 |
+
from torchmil.models import ABMIL
|
35 |
+
from torchmil.utils import Trainer
|
36 |
+
from torchmil.data import collate_fn
|
37 |
+
from torch.utils.data import DataLoader
|
38 |
+
|
39 |
+
# Load the Camelyon16 dataset
|
40 |
+
dataset = Camelyon16MIL(root='data', features='UNI')
|
41 |
+
dataloader = DataLoader(dataset, batch_size=4, shuffle=True, collate_fn=collate_fn)
|
42 |
+
|
43 |
+
# Instantiate the ABMIL model and optimizer
|
44 |
+
model = ABMIL(in_shape=(2048,), criterion=torch.nn.BCEWithLogitsLoss()) # each model has its own criterion
|
45 |
+
optimizer = torch.optim.Adam(model.parameters(), lr=1e-4)
|
46 |
+
|
47 |
+
# Instantiate the Trainer
|
48 |
+
trainer = Trainer(model, optimizer, device='cuda')
|
49 |
+
|
50 |
+
# Train the model
|
51 |
+
trainer.train(dataloader, epochs=10)
|
52 |
+
|
53 |
+
# Save the model
|
54 |
+
torch.save(model.state_dict(), 'model.pth')
|
55 |
+
```
|
56 |
+
|
57 |
+
## Next steps
|
58 |
+
|
59 |
+
You can take a look at the [examples](https://franblueee.github.io/torchmil/examples/) to see how to use **torchmil** in practice.
|
60 |
+
To see the full list of available models, datasets, and modules, check the [API reference](https://franblueee.github.io/torchmil/api/).
|
61 |
+
|
62 |
+
## Contributing to torchmil
|
63 |
+
|
64 |
+
We welcome contributions to **torchmil**! There several ways you can contribute:
|
65 |
+
|
66 |
+
- Reporting bugs or issues you encounter while using the library, asking questions, or requesting new features: use the [Github issues](https://github.com/Franblueee/torchmil/issues).
|
67 |
+
- Improving the documentation: if you find any part of the documentation unclear or incomplete, feel free to submit a pull request with improvements.
|
68 |
+
- If you have a new model, dataset, or utility that you think would be useful for the community, please consider submitting a pull request to add it to the library.
|
69 |
+
|
70 |
+
Take a look at [CONTRIBUTING.md](https://github.com/Franblueee/torchmil/blob/main/CONTRIBUTING.md) for more details on how to contribute.
|
71 |
+
|
72 |
+
## Citation
|
73 |
+
|
74 |
+
If you find this library useful, please consider citing it:
|
75 |
+
|
76 |
+
```bibtex
|
77 |
+
@misc{torchmil,
|
78 |
+
author = {Castro-Mac{\'\i}as, Francisco M and S{\'a}ez-Maldonado, Francisco Javier and Morales Alvarez, Pablo and Molina, Rafael},
|
79 |
+
title = {torchmil: A PyTorch-based library for deep Multiple Instance Learning},
|
80 |
+
year = {2025},
|
81 |
+
howpublished = {\url{https://franblueee.github.io/torchmil/}}
|
82 |
+
}
|
83 |
+
```
|