import gradio as gr
import numpy as np
import nrrd
import matplotlib.pyplot as plt
import io
from PIL import Image

# Set Matplotlib to use the 'Agg' backend
plt.switch_backend('Agg')

def load_nrrd(file_obj):
    data, _ = nrrd.read(file_obj)
    return data

def get_slice(data, slice_index, view):
    if view == "Axial":
        return data[:, :, slice_index]
    elif view == "Coronal":
        return data[:, slice_index, :]
    elif view == "Sagittal":
        return data[slice_index, :, :]

def visualize_slice(file_obj, slice_index, view):
    data = load_nrrd(file_obj)
    
    # Get the appropriate slice based on the selected view
    slice_image = get_slice(data, slice_index, view)

    # Rotate the image 90 degrees clockwise
    slice_image = np.rot90(slice_image, k=-1)

    # Flip the image from left to right along the vertical axis
    slice_image = np.fliplr(slice_image)

    # Flip the image from top to bottom along the horizontal axis for coronal and sagittal views
    if view in ["Coronal", "Sagittal"]:
        slice_image = np.flipud(slice_image)

    # Plot the slice
    fig, ax = plt.subplots()
    ax.imshow(slice_image, cmap='gray')
    plt.axis('off')
    
    # Convert matplotlib figure to PIL Image
    buf = io.BytesIO()
    fig.savefig(buf, format='png')
    plt.close(fig)
    buf.seek(0)
    pil_img = Image.open(buf)
    
    return pil_img

def update_slider(file_obj, view):
    data = load_nrrd(file_obj)
    if view == "Axial":
        num_slices = data.shape[2]
    elif view == "Coronal":
        num_slices = data.shape[1]
    elif view == "Sagittal":
        num_slices = data.shape[0]
    
    middle_slice = num_slices // 2  # Calculate the middle slice
    return gr.update(maximum=num_slices-1, value=middle_slice)  # Set the slider to start in the middle

with gr.Blocks() as app:
    gr.Markdown("## NRRD Slice Visualizer")
    gr.Markdown("Upload an NRRD file and use the slider to select and visualize slices.")
    
    file_input = gr.File(label="Upload NRRD File")
    view_selector = gr.Dropdown(choices=["Axial", "Coronal", "Sagittal"], value="Axial", label="View Selector")
    slider = gr.Slider(minimum=0, maximum=1, step=1, value=0, label="Slice Selector")
    image_output = gr.Image(type="pil", label="Selected Slice")
    
    file_input.change(fn=update_slider, inputs=[file_input, view_selector], outputs=slider)
    view_selector.change(fn=update_slider, inputs=[file_input, view_selector], outputs=slider)
    file_input.change(fn=visualize_slice, inputs=[file_input, slider, view_selector], outputs=image_output)
    slider.change(fn=visualize_slice, inputs=[file_input, slider, view_selector], outputs=image_output)
    view_selector.change(fn=visualize_slice, inputs=[file_input, slider, view_selector], outputs=image_output)

app.launch()