Duplicate from pszemraj/pdf-ocr

Co-authored-by: Peter Szemraj <[email protected]>

.gitattributes

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+*.7z filter=lfs diff=lfs merge=lfs -text
+*.arrow filter=lfs diff=lfs merge=lfs -text
+*.bin filter=lfs diff=lfs merge=lfs -text
+*.bz2 filter=lfs diff=lfs merge=lfs -text
+*.ftz filter=lfs diff=lfs merge=lfs -text
+*.gz filter=lfs diff=lfs merge=lfs -text
+*.h5 filter=lfs diff=lfs merge=lfs -text
+*.joblib filter=lfs diff=lfs merge=lfs -text
+*.lfs.* filter=lfs diff=lfs merge=lfs -text
+*.model filter=lfs diff=lfs merge=lfs -text
+*.msgpack filter=lfs diff=lfs merge=lfs -text
+*.npy filter=lfs diff=lfs merge=lfs -text
+*.npz filter=lfs diff=lfs merge=lfs -text
+*.onnx filter=lfs diff=lfs merge=lfs -text
+*.ot filter=lfs diff=lfs merge=lfs -text
+*.parquet filter=lfs diff=lfs merge=lfs -text
+*.pickle filter=lfs diff=lfs merge=lfs -text
+*.pkl filter=lfs diff=lfs merge=lfs -text
+*.pb filter=lfs diff=lfs merge=lfs -text
+*.pt filter=lfs diff=lfs merge=lfs -text
+*.pth filter=lfs diff=lfs merge=lfs -text
+*.rar filter=lfs diff=lfs merge=lfs -text
+saved_model/**/* filter=lfs diff=lfs merge=lfs -text
+*.tar.* filter=lfs diff=lfs merge=lfs -text
+*.tflite filter=lfs diff=lfs merge=lfs -text
+*.tgz filter=lfs diff=lfs merge=lfs -text
+*.wasm filter=lfs diff=lfs merge=lfs -text
+*.xz filter=lfs diff=lfs merge=lfs -text
+*.zip filter=lfs diff=lfs merge=lfs -text
+*.zst filter=lfs diff=lfs merge=lfs -text
+*tfevents* filter=lfs diff=lfs merge=lfs -text

.gitignore

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+# logs
+*.log
+*LOGFILE*
+
+# output files need to be force-added
+*.csv
+*.png
+*.jpg
+*.jpeg
+*.pkl
+*.xlsx
+*.txt
+
+# cache
+*__pycache__/
+*.pyc
+
+# reports folder - need to be force-added
+*reports/
+
+# scratch files and folders
+
+*scratch*
+*scratch/
+
+# notebooks
+
+*notebooks/
+*.ipynb

README.md

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+---
+title: PDF OCR
+emoji: 📝📎
+colorFrom: orange
+colorTo: blue
+sdk: gradio
+sdk_version: 3.4
+app_file: app.py
+pinned: false
+license: gpl-3.0
+duplicated_from: pszemraj/pdf-ocr
+---
+
+Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference

app.py

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+import logging
+import time
+from pathlib import Path
+import contextlib
+
+logging.basicConfig(
+    level=logging.INFO,
+    format="%(asctime)s - %(levelname)s - %(message)s",
+)
+
+
+import gradio as gr
+import nltk
+import torch
+
+from pdf2text import *
+
+_here = Path(__file__).parent
+
+nltk.download("stopwords")  # TODO=find where this requirement originates from
+
+
+def load_uploaded_file(file_obj, temp_dir: Path = None):
+    """
+    load_uploaded_file - process an uploaded file
+
+    Args:
+        file_obj (POTENTIALLY list): Gradio file object inside a list
+
+    Returns:
+        str, the uploaded file contents
+    """
+
+    # check if mysterious file object is a list
+    if isinstance(file_obj, list):
+        file_obj = file_obj[0]
+    file_path = Path(file_obj.name)
+
+    if temp_dir is None:
+        _temp_dir = _here / "temp"
+    _temp_dir.mkdir(exist_ok=True)
+
+    try:
+        pdf_bytes_obj = open(file_path, "rb").read()
+        temp_path = temp_dir / file_path.name if temp_dir else file_path
+        # save to PDF file
+        with open(temp_path, "wb") as f:
+            f.write(pdf_bytes_obj)
+        logging.info(f"Saved uploaded file to {temp_path}")
+        return str(temp_path.resolve())
+
+    except Exception as e:
+        logging.error(f"Trying to load file with path {file_path}, error: {e}")
+        print(f"Trying to load file with path {file_path}, error: {e}")
+        return None
+
+
+def convert_PDF(
+    pdf_obj,
+    language: str = "en",
+    max_pages=20,
+):
+    """
+    convert_PDF - convert a PDF file to text
+
+    Args:
+        pdf_bytes_obj (bytes): PDF file contents
+        language (str, optional): Language to use for OCR. Defaults to "en".
+
+    Returns:
+        str, the PDF file contents as text
+    """
+    # clear local text cache
+    rm_local_text_files()
+    global ocr_model
+    st = time.perf_counter()
+    if isinstance(pdf_obj, list):
+        pdf_obj = pdf_obj[0]
+    file_path = Path(pdf_obj.name)
+    if not file_path.suffix == ".pdf":
+        logging.error(f"File {file_path} is not a PDF file")
+
+        html_error = f"""
+        <div style="color: red; font-size: 20px; font-weight: bold;">
+        File {file_path} is not a PDF file. Please upload a PDF file.
+        </div>
+        """
+        return "File is not a PDF file", html_error, None
+
+    conversion_stats = convert_PDF_to_Text(
+        file_path,
+        ocr_model=ocr_model,
+        max_pages=max_pages,
+    )
+    converted_txt = conversion_stats["converted_text"]
+    num_pages = conversion_stats["num_pages"]
+    was_truncated = conversion_stats["truncated"]
+    # if alt_lang: # TODO: fix this
+
+    rt = round((time.perf_counter() - st) / 60, 2)
+    print(f"Runtime: {rt} minutes")
+    html = ""
+    if was_truncated:
+        html += f"<p>WARNING - PDF was truncated to {max_pages} pages</p>"
+    html += f"<p>Runtime: {rt} minutes on CPU for {num_pages} pages</p>"
+
+    _output_name = f"RESULT_{file_path.stem}_OCR.txt"
+    with open(_output_name, "w", encoding="utf-8", errors="ignore") as f:
+        f.write(converted_txt)
+
+    return converted_txt, html, _output_name
+
+
+if __name__ == "__main__":
+    logging.info("Starting app")
+
+    use_GPU = torch.cuda.is_available()
+    logging.info(f"Using GPU status: {use_GPU}")
+    logging.info("Loading OCR model")
+    with contextlib.redirect_stdout(None):
+        ocr_model = ocr_predictor(
+            "db_resnet50",
+            "crnn_mobilenet_v3_large",
+            pretrained=True,
+            assume_straight_pages=True,
+        )
+
+    # define pdf bytes as None
+    pdf_obj = _here / "example_file.pdf"
+    pdf_obj = str(pdf_obj.resolve())
+    _temp_dir = _here / "temp"
+    _temp_dir.mkdir(exist_ok=True)
+
+    logging.info("starting demo")
+    demo = gr.Blocks()
+
+    with demo:
+
+        gr.Markdown("# PDF to Text")
+        gr.Markdown(
+            "A basic demo of pdf-to-text conversion using OCR from the [doctr](https://mindee.github.io/doctr/index.html) package"
+        )
+        gr.Markdown("---")
+
+        with gr.Column():
+
+            gr.Markdown("## Load Inputs")
+            gr.Markdown("Upload your own file & replace the default. Files should be < 10MB to avoid upload issues - search for a PDF compressor online as needed.")
+            gr.Markdown(
+                "_If no file is uploaded, a sample PDF will be used. PDFs are truncated to 20 pages._"
+            )
+
+            uploaded_file = gr.File(
+                label="Upload a PDF file",
+                file_count="single",
+                type="file",
+                value=_here / "example_file.pdf",
+            )
+
+            gr.Markdown("---")
+
+        with gr.Column():
+            gr.Markdown("## Convert PDF to Text")
+            convert_button = gr.Button("Convert PDF!", variant="primary")
+            out_placeholder = gr.HTML("<p><em>Output will appear below:</em></p>")
+            gr.Markdown("### Output")
+            OCR_text = gr.Textbox(
+                label="OCR Result", placeholder="The OCR text will appear here"
+            )
+            text_file = gr.File(
+                label="Download Text File",
+                file_count="single",
+                type="file",
+                interactive=False,
+            )
+
+        convert_button.click(
+            fn=convert_PDF,
+            inputs=[uploaded_file],
+            outputs=[OCR_text, out_placeholder, text_file],
+        )
+    demo.launch(enable_queue=True)

pdf2text.py

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+# -*- coding: utf-8 -*-
+"""
+
+easyocr.py - A wrapper for easyocr to convert pdf to images to text
+"""
+
+import logging
+from pathlib import Path
+
+logging.basicConfig(
+    level=logging.INFO,
+    format="%(asctime)s %(levelname)s %(message)s",
+    datefmt="%m/%d/%Y %I:%M:%S",
+)
+
+
+import os
+import pprint as pp
+import re
+import shutil
+import time
+from datetime import date, datetime
+from os.path import basename, dirname, join
+from pathlib import Path
+
+from cleantext import clean
+from doctr.io import DocumentFile
+from doctr.models import ocr_predictor
+from libretranslatepy import LibreTranslateAPI
+from natsort import natsorted
+from spellchecker import SpellChecker
+from tqdm.auto import tqdm
+
+
+def simple_rename(filepath, target_ext=".txt"):
+    _fp = Path(filepath)
+    basename = _fp.stem
+    return f"OCR_{basename}_{target_ext}"
+
+
+def rm_local_text_files(name_contains="RESULT_"):
+    """
+    rm_local_text_files - remove local text files
+
+    Args:
+        name_contains (str, optional): [description]. Defaults to "OCR_".
+    """
+    files = [
+        f
+        for f in Path.cwd().iterdir()
+        if f.is_file() and f.suffix == ".txt" and name_contains in f.name
+    ]
+    logging.info(f"removing {len(files)} text files")
+    for f in files:
+        os.remove(f)
+    logging.info("done")
+
+
+def corr(
+    s: str,
+    add_space_when_numerics=False,
+    exceptions=["e.g.", "i.e.", "etc.", "cf.", "vs.", "p."],
+) -> str:
+    """corrects spacing in a string
+
+    Args:
+        s (str): the string to correct
+        add_space_when_numerics (bool, optional): [add a space when a period is between two numbers, example 5.73]. Defaults to False.
+        exceptions (list, optional): [do not change these substrings]. Defaults to ['e.g.', 'i.e.', 'etc.', 'cf.', 'vs.', 'p.'].
+
+    Returns:
+        str: the corrected string
+    """
+    if add_space_when_numerics:
+        s = re.sub(r"(\d)\.(\d)", r"\1. \2", s)
+
+    s = re.sub(r"\s+", " ", s)
+    s = re.sub(r'\s([?.!"](?:\s|$))', r"\1", s)
+
+    # fix space before apostrophe
+    s = re.sub(r"\s\'", r"'", s)
+    # fix space after apostrophe
+    s = re.sub(r"'\s", r"'", s)
+    # fix space before comma
+    s = re.sub(r"\s,", r",", s)
+
+    for e in exceptions:
+        expected_sub = re.sub(r"\s", "", e)
+        s = s.replace(expected_sub, e)
+
+    return s
+
+
+def fix_punct_spaces(string):
+    """
+    fix_punct_spaces - replace spaces around punctuation with punctuation. For example, "hello , there" -> "hello, there"
+
+    Parameters
+    ----------
+    string : str, required, input string to be corrected
+
+    Returns
+    -------
+    str, corrected string
+    """
+
+    fix_spaces = re.compile(r"\s*([?!.,]+(?:\s+[?!.,]+)*)\s*")
+    string = fix_spaces.sub(lambda x: "{} ".format(x.group(1).replace(" ", "")), string)
+    string = string.replace(" ' ", "'")
+    string = string.replace(' " ', '"')
+    return string.strip()
+
+
+def clean_OCR(ugly_text: str):
+    """
+    clean_OCR - clean the OCR text files.
+
+    Parameters
+    ----------
+    ugly_text : str, required, input string to be cleaned
+
+    Returns
+    -------
+    str, cleaned string
+    """
+    # Remove all the newlines.
+    cleaned_text = ugly_text.replace("\n", " ")
+    # Remove all the tabs.
+    cleaned_text = cleaned_text.replace("\t", " ")
+    # Remove all the double spaces.
+    cleaned_text = cleaned_text.replace("  ", " ")
+    # Remove all the spaces at the beginning of the text.
+    cleaned_text = cleaned_text.lstrip()
+    # remove all instances of "- " and " - "
+    cleaned_text = cleaned_text.replace("- ", "")
+    cleaned_text = cleaned_text.replace(" -", "")
+    return fix_punct_spaces(cleaned_text)
+
+
+def move2completed(from_dir, filename, new_folder="completed", verbose=False):
+
+    # this is the better version
+    old_filepath = join(from_dir, filename)
+
+    new_filedirectory = join(from_dir, new_folder)
+
+    if not os.path.isdir(new_filedirectory):
+        os.mkdir(new_filedirectory)
+        if verbose:
+            print("created new directory for files at: \n", new_filedirectory)
+    new_filepath = join(new_filedirectory, filename)
+
+    try:
+        shutil.move(old_filepath, new_filepath)
+        logging.info("successfully moved the file {} to */completed.".format(filename))
+    except:
+        logging.info(
+            "ERROR! unable to move file to \n{}. Please investigate".format(
+                new_filepath
+            )
+        )
+
+
+"""## pdf2text functions
+
+"""
+
+
+custom_replace_list = {
+    "t0": "to",
+    "'$": "'s",
+    ",,": ", ",
+    "_ ": " ",
+    " '": "'",
+}
+
+replace_corr_exceptions = {
+    "i. e.": "i.e.",
+    "e. g.": "e.g.",
+    "e. g": "e.g.",
+    " ,": ",",
+}
+
+
+spell = SpellChecker()
+
+
+def check_word_spelling(word: str) -> bool:
+    """
+    check_word_spelling - check the spelling of a word
+
+    Args:
+        word (str): word to check
+
+    Returns:
+        bool: True if word is spelled correctly, False if not
+    """
+
+    misspelled = spell.unknown([word])
+
+    return len(misspelled) == 0
+
+
+def eval_and_replace(text: str, match_token: str = "- ") -> str:
+    """
+    eval_and_replace  - conditionally replace all instances of a substring in a string based on whether the eliminated substring results in a valid word
+
+    Args:
+        text (str): text to evaluate
+        match_token (str, optional): token to replace. Defaults to "- ".
+
+    Returns:
+        str:  text with replaced tokens
+    """
+
+    if match_token not in text:
+        return text
+    else:
+        while True:
+            full_before_text = text.split(match_token, maxsplit=1)[0]
+            before_text = [
+                char for char in full_before_text.split()[-1] if char.isalpha()
+            ]
+            before_text = "".join(before_text)
+            full_after_text = text.split(match_token, maxsplit=1)[-1]
+            after_text = [char for char in full_after_text.split()[0] if char.isalpha()]
+            after_text = "".join(after_text)
+            full_text = before_text + after_text
+            if check_word_spelling(full_text):
+                text = full_before_text + full_after_text
+            else:
+                text = full_before_text + " " + full_after_text
+            if match_token not in text:
+                break
+        return text
+
+
+def cleantxt_ocr(ugly_text, lower=False, lang: str = "en") -> str:
+    """
+    cleantxt_ocr - clean text from OCR
+
+    Args:
+        ugly_text (str): text to clean
+        lower (bool, optional): _description_. Defaults to False.
+        lang (str, optional): _description_. Defaults to "en".
+
+    Returns:
+        str: cleaned text
+    """
+    # a wrapper for clean text with options different than default
+
+    # https://pypi.org/project/clean-text/
+    cleaned_text = clean(
+        ugly_text,
+        fix_unicode=True,  # fix various unicode errors
+        to_ascii=True,  # transliterate to closest ASCII representation
+        lower=lower,  # lowercase text
+        no_line_breaks=True,  # fully strip line breaks as opposed to only normalizing them
+        no_urls=True,  # replace all URLs with a special token
+        no_emails=True,  # replace all email addresses with a special token
+        no_phone_numbers=False,  # replace all phone numbers with a special token
+        no_numbers=False,  # replace all numbers with a special token
+        no_digits=False,  # replace all digits with a special token
+        no_currency_symbols=False,  # replace all currency symbols with a special token
+        no_punct=False,  # remove punctuations
+        replace_with_punct="",  # instead of removing punctuations you may replace them
+        replace_with_url="<URL>",
+        replace_with_email="<EMAIL>",
+        replace_with_phone_number="<PHONE>",
+        replace_with_number="<NUM>",
+        replace_with_digit="0",
+        replace_with_currency_symbol="<CUR>",
+        lang=lang,  # set to 'de' for German special handling
+    )
+
+    return cleaned_text
+
+
+def format_ocr_out(OCR_data):
+
+    if isinstance(OCR_data, list):
+        text = " ".join(OCR_data)
+    else:
+        text = str(OCR_data)
+    _clean = cleantxt_ocr(text)
+    return corr(_clean)
+
+
+def postprocess(text: str) -> str:
+    """to be used after recombining the lines"""
+
+    proc = corr(cleantxt_ocr(text))
+
+    for k, v in custom_replace_list.items():
+        proc = proc.replace(str(k), str(v))
+
+    proc = corr(proc)
+
+    for k, v in replace_corr_exceptions.items():
+        proc = proc.replace(str(k), str(v))
+
+    return eval_and_replace(proc)
+
+
+def result2text(result, as_text=False) -> str or list:
+    """Convert OCR result to text"""
+
+    full_doc = []
+    for i, page in enumerate(result.pages, start=1):
+        text = ""
+        for block in page.blocks:
+            text += "\n\t"
+            for line in block.lines:
+                for word in line.words:
+                    # print(dir(word))
+                    text += word.value + " "
+        full_doc.append(text)
+
+    return "\n".join(full_doc) if as_text else full_doc
+
+
+def convert_PDF_to_Text(
+    PDF_file,
+    ocr_model=None,
+    max_pages: int = 20,
+):
+
+    st = time.perf_counter()
+    PDF_file = Path(PDF_file)
+    ocr_model = ocr_predictor(pretrained=True) if ocr_model is None else ocr_model
+    logging.info(f"starting OCR on {PDF_file.name}")
+    doc = DocumentFile.from_pdf(PDF_file)
+    truncated = False
+    if len(doc) > max_pages:
+        logging.warning(
+            f"PDF has {len(doc)} pages, which is more than {max_pages}.. truncating"
+        )
+        doc = doc[:max_pages]
+        truncated = True
+
+    # Analyze
+    logging.info(f"running OCR on {len(doc)} pages")
+    result = ocr_model(doc)
+    raw_text = result2text(result)
+    proc_text = [format_ocr_out(r) for r in raw_text]
+    fin_text = [postprocess(t) for t in proc_text]
+
+    ocr_results = "\n\n".join(fin_text)
+
+    fn_rt = time.perf_counter() - st
+
+    logging.info("OCR complete")
+
+    results_dict = {
+        "num_pages": len(doc),
+        "runtime": round(fn_rt, 2),
+        "date": str(date.today()),
+        "converted_text": ocr_results,
+        "truncated": truncated,
+        "length": len(ocr_results),
+    }
+
+    return results_dict
+
+
+# @title translation functions
+
+lt = LibreTranslateAPI("https://translate.astian.org/")
+
+
+def translate_text(text, source_l, target_l="en"):
+
+    return str(lt.translate(text, source_l, target_l))
+
+
+def translate_doc(filepath, lang_start, lang_end="en", verbose=False):
+    """translate a document from lang_start to lang_end
+
+        {'code': 'en', 'name': 'English'},
+    {'code': 'fr', 'name': 'French'},
+    {'code': 'de', 'name': 'German'},
+    {'code': 'it', 'name': 'Italian'},"""
+
+    src_folder = dirname(filepath)
+    src_folder = Path(src_folder)
+    trgt_folder = src_folder / f"translated_{lang_end}"
+    trgt_folder.mkdir(exist_ok=True)
+    with open(filepath, "r", encoding="utf-8", errors="ignore") as f:
+        foreign_t = f.readlines()
+    in_name = basename(filepath)
+    translated_doc = []
+    for line in tqdm(
+        foreign_t, total=len(foreign_t), desc="translating {}...".format(in_name[:10])
+    ):
+        translated_line = translate_text(line, lang_start, lang_end)
+        translated_doc.append(translated_line)
+    t_out_name = "[To {}]".format(lang_end) + simple_rename(in_name) + ".txt"
+    out_path = join(trgt_folder, t_out_name)
+    with open(out_path, "w", encoding="utf-8", errors="ignore") as f_o:
+        f_o.writelines(translated_doc)
+    if verbose:
+        print("finished translating the document! - ", datetime.now())
+    return out_path

requirements.txt

@@ -0,0 +1,9 @@
+clean-text[gpl]
+python-doctr[torch]
+gradio
+libretranslatepy
+natsort
+nltk
+pyspellchecker
+torch
+tqdm