Dockerfile.base

#R-Shiny template https://huggingface.co/spaces/posit/shiny-for-r-template/tree/main
#Py-shiny template https://huggingface.co/spaces/posit/gptneox-chat

#############################
# RSTUDIO-SERVER            #
# VOLUME DOCKERFILE         #
#***************************#
# Set up a jupyter-lab for  #
# developing using deepvats #
#############################

##############
# Base image #
##############
# Adds rstudio server, tiyverse, devtools to rocker/cuda
FROM rocker/ml:4.2



###############
# Ensure vars # (Only for local test - DON'T USE IT IN HUGGINGFACE. ENSURE .env IS NOT ACCESIBLE IN THE WEB, USE THEIR SECRET MANAGEMENT)
###############
RUN echo "--> ARGS"
ARG USER_NAME \
    USER_ID \
    GROUP_ID \
    WANDB_API_KEY \ 
    WANDB_ENTITY \
    WANDB_PROJECT \
    GH_TOKEN 

RUN echo "--> ARGS -> ENV"
ENV USER_NAME=$USER_NAME \
    USER_ID=$USER_ID \
    GROUP_ID=$GROUP_ID \
    WANDB_ENTITY=$WANDB_ENTITY \
    WANDB_API_KEY=$WANDB_API_KEY \
    GH_TOKEN=$ghtoken \
    WANDB_PROJECT=$WANDB_PROJECT

RUN echo "--> Setup ENV variables"
ENV RETICULATE_PYTHON_ENV=/opt/env \
    ROOT=TRUE \
    RETICULATE_MINICONDA_PATH=/opt/miniconda \
    CUDA_VISIBLE_DEVICES=0,1,2 \
    ENV_VARS=WANDB_ENTITY,WANDB_PROJECT,USER_NAME,USER_ID,GROUP_ID,PASSWORD,ROOT,CUDA_VISIBLE_DEVICES\
    HOME="/home/${USER_NAME}"

###########
# Volumes #
###########

RUN echo "---> Setup volumes" \
    echo ${HOME} \
    echo ${USER_NAME}"|"${USER_ID}"|"${GROUP_ID} 

COPY --chown=${USER_ID}:${GROUP_ID} ../r_shiny_app $HOME/app
COPY --chown=${USER_ID}:${GROUP_ID} ${LOCAL_DATA_PATH} $HOME/data/
COPY --chown=${USER_ID}:${GROUP_ID} ../dvats ${HOME}/dvats

RUN echo "--> Prior installations" \ 
    apt-key adv --keyserver keyserver.ubuntu.com --recv-keys A4B469963BF863CC \
    set -e; \
    apt-get update --fix-missing \
    && apt-get install -y \
    python3-pip wget bzip2 curl \
    #dbus python3-pip wget bzip2 curl \
    git sudo libarchive-dev libtiff5-dev zsh\
    #python3 -m pip install --upgrade pip \
    python3-venv libxt-dev \
    && apt-get clean  \
    && rm -rf /var/lib/apt/lists/*