libtiff line added

Dockerfile

@@ -24,19 +24,21 @@ SHELL [ "/bin/bash", "--login", "-c" ]
 #ARG WANDB_ENTITY
 #ARG WANDB_PROJECT
 #ARG GH_TOKEN
-
-
+#
+#
 #ENV USER_NAME=$USER_NAME
 #ENV USER_ID=$USER_ID
 #ENV GROUP_ID=$GROUP_ID
 #ENV WANDB_ENTITY=$WANDB_ENTITY
 #ENV WANDB_API_KEY=$WANDB_API_KEY
+#ENV GH_TOKEN=$ghtoken
+
+RUN echo "--> Setup variables"
 ENV RETICULATE_PYTHON_ENV=/home/${USER_NAME}/env
 ENV RETICULATE_MINICONDA_PATH=/home/${USER_NAME}/miniconda
 #ENV WANDB_PROJECT=$WANDB_PROJECT
 ENV ROOT=TRUE
 ENV CUDA_VISIBLE_DEVICES=0,1,2
-ENV GH_TOKEN=$ghtoken
 ENV ENV_VARS=WANDB_ENTITY,WANDB_PROJECT,USER_NAME,USER_ID,GROUP_ID,PASSWORD,ROOT,CUDA_VISIBLE_DEVICES
 
 ENV HOME /home/${USER_NAME}
@@ -45,7 +47,7 @@ ENV HOME /home/${USER_NAME}
 # Volumes #
 ###########
 
-
+RUN echo "---> Setup volumes"
 RUN echo ${HOME}
 RUN echo ${USER_NAME}"|"${USER_ID}"|"${GROUP_ID}
 COPY --chown=${USER_ID}:${GROUP_ID} ../r_shiny_app /$HOME/app
@@ -53,10 +55,17 @@ COPY --chown=${USER_ID}:${GROUP_ID} ${LOCAL_DATA_PATH} /$HOME/data/
 COPY --chown=${USER_ID}:${GROUP_ID} ../dvats ${HOME}/dvats
 
 RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys A4B469963BF863CC 
-RUN apt-get update
-RUN apt-get install -y python3-pip
+RUN apt-get update --fix-missing \
+    && apt-get install -y python3-pip \
+    && apt-get install -y wget bzip2 curl git sudo libarchive-dev libtiff5-dev zsh\
+    #Otherwise
+ #   && apt-get install -y wget bzip2 curl git sudo \
+    && apt-get clean  \
+    && rm -rf /var/lib/apt/lists/*
+
 RUN python3 -m pip install --upgrade pip
 RUN apt-get install -y python3-venv libxt-dev
+
 ## Install R packages
 
 #COPY docker/DESCRIPTION /tmp/
@@ -64,6 +73,8 @@ COPY --chown=${USER_ID}:${GROUP_ID} docker/DESCRIPTION /tmp/
 
 RUN ls -la /tmp/ && sleep 5
 
+RUN echo "--> Install R packages"
+
 #RUN R -e "install.packages(deps_path = '/tmp/DESCRIPTION', remotes::dev_package_deps(dependencies = TRUE), repos = NULL)"
 
 RUN R -e "devtools::install_deps('/tmp/', dependencies = TRUE)"